Define where the pipeline should find input data and save output data.
Reference genome related files and options required for the workflow.
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.
Use these parameters to also enable reproducible results from the individual assembly and binning tools .
Taxonomic classification is disabled by default. You have to specify one of the options below to activate it.
Performs ancient DNA assembly validation and contig consensus sequence recalling.