pipeline_todos

PipelineLint.pipeline_todos(root_dir=None)

Check for nf-core TODO lines.

The nf-core workflow template contains a number of comment lines to help developers of new pipelines know where they need to edit files and add content. They typically have the following format:

// TODO nf-core: Make some kind of change to the workflow here

..or in markdown:

<!-- TODO nf-core: Add some detail to the docs here -->

This lint test runs through all files in the pipeline and searches for these lines. If any are found they will throw a warning.