nf-core/configs
Browse the 137 configs that are currently available as part of nf-core.
The following configs are common Nextflow pipeline configurations and options for particular institutional clusters or compute environments.
| Name | Description | Executor |
|---|---|---|
| The ABiMS cluster profile | slurm | |
| CRA HPC profile | slurm | |
| Profile for use on Academic Leiden Interdisciplinary Cluster Environment (ALICE). | slurm | |
| COH Apollo cluster profile. | slurm | |
| Advanced Research Computing Center (ARCC) for the University of Wyoming | slurm | |
| AWS Batch with Tower Profile | awsbatch | |
| AWSBATCH Cloud Profile | awsbatch | |
| Azure BATCH Cloud Profile | azurebatch | |
| Azure BATCH Dev Cloud Profile | azurebatch | |
| Boehringer Ingelheim internal profile. | ||
| NYU School of Medicine BigPurple cluster profile. module load both singularity/3.1 and squashfs-tools/4.3 before running the pipeline with this profile!! Run from your scratch or lab directory - Nextflow makes a lot of files!! Also consider running the pipeline on a compute node (srun --pty /bin/bash -t=01:00:00) the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node and will take some time. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default the images will be stored in ${singularityDir} | slurm | |
| Berlin Institute of Health HPC cluster profile. | slurm | |
| BinAC cluster profile. | pbs | |
| BioHPC Genomics (biohpc_gen) cluster profile | slurm | |
| Biowulf nf-core config | slurm | |
| BlueBEAR cluster profile | slurm | |
| Cambridge HPC cluster profile. | slurm | |
| CLIP BATCH ENVIRONMENT (CBE) cluster profile | slurm | |
| CCGA DX cluster profile. | slurm | |
| CCGA Med cluster profile. | slurm | |
| CÉCI Dragon2 cluster profiles provided by the GIGA Bioinformatics Team. | slurm | |
| CÉCI NIC5 cluster profiles provided by the GIGA Bioinformatics Team. | slurm | |
| Cedars-Sinai Medical Center HPC Profile | sge | |
| USDA ARS SCINet Ceres Cluster profile | slurm | |
| QBiC Core Facility cluster profile. | slurm | |
| QBiC Core Facility cluster dev profile without container cache. | slurm | |
| University of Alabama at Birmingham Cheaha HPC | slurm | |
| Computerome 2.0 cluster profile. | pbs | |
| e-Research Kings College London CREATE HPC | slurm | |
| Centre for Genomic Regulation (CRG) cluster profile | slurm | |
| The Francis Crick Institute NEMO HPC cluster profile. | slurm | |
| Cancer Research UK Manchester Institute HPC cluster profile | slurm | |
| CSIRO Petrichor HPC profile | slurm | |
| Chan Zuckerberg Biohub AWS Batch profile. | awsbatch | |
| DaiSyBio cluster profile. | slurm | |
| de.NBI cluster profile. | pbs | |
| Deutsches Krebsforschungszentrum (DKFZ) HPC cluster profile | lsf | |
| Generic Estonian Biocentre profile. | slurm | |
| The European Bioinformatics Institute HPC cluster (codon) profile | lsf | |
| The European Bioinformatics Institute HPC cluster (codon) profile for the SLURM login nodes | slurm | |
| University of Edinburgh (eddie) cluster profile. | sge | |
| Novo Nordisks Einstein cluster profile | slurm | |
| The EMBL Heidelberg HPC cluster profile | slurm | |
| MIT Engaging HPC cluster profile. | slurm | |
| ETH Zurich Euler cluster profile -- | slurm | |
| Generic MPI-EVA cluster(s) profile. | sge | |
| FGCZ ETH/UZH | slurm | |
| Freie Universität Berlin HPC (Curta) profile | slurm | |
| The Genotoul cluster profile | slurm | |
| The GenOuest cluster profile | slurm | |
| GIGA cluster profile provided by the GIGA Bioinformatics Team. | slurm | |
| Genome Institute of Singapore (Aquila) cluster profile. | sge | |
| Google Cloud Life Sciences Profile | google-lifesciences | |
| Hasta, a local cluster setup at Clinical Genomics, Stockholm. | slurm | |
| HKI clusters profile. | local | |
| Universidad de los Andes cluster profile. | slurm | |
| Nextflow nf-core profile for ICR davros HPC | LSF | |
| The IFB core cluster profile | slurm | |
| Ilifu (https://ilifu.ac.za) slurm cluster profile. | slurm | |
| Institute of Molecular Biology (IMB) HPC cluster profile | slurm | |
| Imperial College London - HPC Profile --. | pbspro | |
| INCLIVA Health Research Institute profile for nf-core. | local | |
| iPOP-UP cluster profile, Université paris Cité | slurm | |
| IBM Platform LSF Cluster at Janelia Research Campus | lsf | |
| The Jackson Laboratory Sumner HPC profile. | slurm | |
| Nextflow config file for the MRC LMS Jex cluster | slurm | |
| Profile for use on King Abdullah Univesity of Science and Technology (KAUST) Ibex Cluster. | slurm | |
| danhead01fl configuration | slurm | |
| ALICE and SPECTRE cluster profile. | slurm | |
| National University of Ireland, Galway Lugh cluster profile | slurm | |
| The M3 Research Center HPC cluster profile | slurm | |
| Institut Pasteur Maestro cluster profile | slurm | |
| University of Hawaii at Manoa | slurm | |
| Novo Nordisks Marjorie cluster profile | slurm | |
| Config file for Marvin Cluster (UPF-CSIC), based on nf-core/configs | slurm | |
| McCleary Cluster at Yale | slurm | |
| Cluster profile for medair (local cluster of Clinical Genomics Gothenburg) | sge | |
| Section for Hologenomics and Section for Molecular Ecology and Evolution @ Globe Institute, University of Copenhagen - mjolnir_globe profile. | slurm | |
| MPCDF HPC profiles (unoffically). | slurm | |
| MPCDF Viper HPC profiles (unoffically). | slurm | |
| MUNIN profile | local | |
| NCI Gadi HPC profile | pbspro | |
| Northwestern University Quest HPC (Genomics Nodes) config | slurm | |
| New York Genome Center (NYGC) cluster profile. | slurm | |
| New York University HPC profile. | slurm | |
| The Okinawa Institute of Science and Technology Graduate University (OIST) HPC cluster profile. | slurm | |
| The Institut Pasteur HPC cluster profile | slurm | |
| Pawsey Nimbus cloud profile | ||
| Pawsey Setonix HPC profile | slurm | |
| PDC profile. | slurm | |
| New York Genome Center (NYGC) cluster profile. | slurm | |
| PSMN (Pôle Scientifique de Modélisation Numérique) HPC cluster profile | slurm | |
| Queen Mary Universtiy of London | sge | |
| Kings College London Rosalind HPC | slurm | |
| Rosalind UGE config file | sge | |
| University of Edinburgh (Eddie) cluster profile for Roslin Institute. | sge | |
| The Sage Bionetworks Nextflow Config Profile | ||
| South Australian Health and Medical Research Institute (SAHMRI) HPC cluster profile. | slurm | |
| The Wellcome Sanger Institute HPC cluster (${clustername}) profile | lsf | |
| Super Computing Wales | slurm | |
| The SCRI (seattle childrens research institute) cluster profile | local | |
| Stony Brook Universitys seaWulf cluster profile. | slurm | |
| Section for Evolutionary Genomics @ GLOBE, University of Copenhagen - seg_globe profile. | slurm | |
| Profile for nf-cores self-hosted runners. | ||
| Sheffield Hallam Universty - BMRC HPC | slurm | |
| Software license set up for nf-core by nf-core/configs | ||
| St. Jude Childrens Research Hospital HPC cluster (HPCF) profile | lsf | |
| GA4GH TES Profile | tes | |
| Telethon Institute of Genetic and Medicine (TIGEM). | slurm | |
| Generic profile for APG group of University of Tuebingen. | slurm | |
| The Tufts University HPC cluster profile. | slurm | |
| Sheffield Bioinformatics Core - Stanage | slurm | |
| University College Dublin Sonic HPC profile. | slurm | |
| University College London CS cluster | sge | |
| University College London Myriad cluster | sge | |
| University of Cape Town High Performance Cluster config file. | slurm | |
| Univa Grid Engine config file | sge | |
| The Lineberger Comprehensive Cancer Center at the University of North Carolina at Chapel Hill | slurm | |
| BARC nf-core profile for UNCs Longleaf HPC. | slurm | |
| University of Bern, Interfaculty Bioinformatics Unit cluster profile | slurm | |
| Unity HPC cluster profile. | slurm | |
| UNSW Katana HPC profile. | pbspro | |
| University of Dundee Compute Cluster | sge | |
| UPPMAX (Bianca) cluster profile. | slurm | |
| University of Texas at Dallas HPC cluster profile | slurm | |
| UW Hyak Pedslabs cluster profile. | slurm | |
| UZH science cloud profile | slurm | |
| University of Luebeck, OMICS cluster profile. | slurm | |
| Van Andel Institute HPC profile. | slurm | |
| Zen2 profile for use on the Vaughan cluster of the CalcUA VSC HPC. | ||
| genius profile for use on the genius cluster of the VSC HPC. | slurm | |
| Configuration profile for execution of Nextflow pipelines on the VSC UGhent HPC. | slurm | |
| Weill Cornell Medicine, Scientific Computing Unit Slurm cluster profile | slurm | |
| Walter and Eliza Hall Institute (WEHI) Milton HPC cluster profile | slurm | |
| WUSTL High Throughput Computing Facility cluster profile. Run from your scratch directory, the output files may be large! Please consider running the pipeline on a compute node the first time, as it will be pulling the docker image, which will be converted into a singularity image, which is heavy on the login node. Subsequent runs can be done on the login node, as the docker image will only be pulled and converted once. By default, the images will be stored in $singularityDir | slurm | |
| The UConn HPC profile | slurm | |
| The University of York Viking profile | slurm |