multiqc_config

PipelineLint.multiqc_config() → Dict[str, List[str]]

Make sure basic multiQC plugins are installed and plots are exported Basic template:

report_comment: >
  This report has been generated by the <a href="https://github.com/nf-core/quantms" target="_blank">nf-core/quantms</a>
  analysis pipeline. For information about how to interpret these results, please see the
  <a href="https://nf-co.re/quantms" target="_blank">documentation</a>.
report_section_order:
  software_versions:
    order: -1000
  nf-core-quantms-summary:
    order: -1001
export_plots: true
Note

You can choose to ignore this lint tests by editing the file called .nf-core.yml in the root of your pipeline and setting the test to false:

lint:
  multiqc_config: False

To disable this test only for specific sections, you can specify a list of section names. For example:

lint: : multiqc_config: : - report_section_order - report_comment