multiqc_config
PipelineLint.multiqc_config() → Dict[str, List[str]]
Make sure basic multiQC plugins are installed and plots are exported Basic template:
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/quantms" target="_blank">nf-core/quantms</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/quantms" target="_blank">documentation</a>.
report_section_order:
software_versions:
order: -1000
nf-core-quantms-summary:
order: -1001
export_plots: true
Note
You can choose to ignore this lint tests by editing the file called
.nf-core.yml
in the root of your pipeline and setting the test to false:
lint:
multiqc_config: False
To disable this test only for specific sections, you can specify a list of section names. For example:
lint: : multiqc_config: : - report_section_order - report_comment