Pipeline Name Released Released after tools master = release JSON Schema Dev activity DSL2 nf-test nf-test in dev Wikis Issues Merge commits Rebase merging Squash merges Default branch Branch in manifest Keywords Description Repo URL Team access Branches exist Branch protection: master branch Branch protection: dev T push Plugins: nf-validation Plugins: nf-prov
airrflow ?
ampliseq ?
atacseq ?
bacass ?
bactmap ?
bamtofastq ?
cageseq ?
callingcards ?
chipseq ?
circdna ?
clipseq ?
coproid ?
crisprseq ?
cutandrun ?
demo ?
demultiplex ?
denovotranscript ?
detaxizer ?
diaproteomics ?
differentialabundance ?
dualrnaseq ?
eager ?
epitopeprediction ?
fastquorum ?
fetchngs ?
funcscan ?
hgtseq ?
hic ?
hicar ?
hlatyping ?
imcyto ?
isoseq ?
kmermaid ?
mag ?
marsseq ?
metaboigniter ?
metapep ?
metatdenovo ?
methylseq
mhcquant ?
mnaseseq ?
molkart ?
multiplesequencealign ?
nanoseq ?
nanostring ?
nascent ?
oncoanalyser ?
pairgenomealign ?
pangenome ?
pgdb ?
phaseimpute ?
phyloplace ?
pixelator ?
proteinfold ?
proteomicslfq ?
raredisease ?
readsimulator ?
reportho ?
riboseq ?
rnafusion ?
rnaseq ?
rnasplice ?
rnavar ?
sarek ?
scnanoseq ?
scrnaseq ?
slamseq ?
smrnaseq ?
taxprofiler ?
viralintegration ?
viralrecon ?
deepvariant ?
neutronstar ? ?
quantms ?
circrna ?
createpanelrefs ?
createtaxdb ?
datasync ?
deepmodeloptim ? ? ? ? ? ?
drugresponseeval ?
fastqrepair ? ?
genomeannotator ?
genomeassembler ?
genomeqc ? ? ? ? ? ? ? ? ? ? ? ?
genomeskim ?
gwas ?
lncpipe ?
magmap ?
mcmicro ?
meerpipe ? ?
methylarray ? ? ? ? ? ? ? ? ? ? ? ?
omicsgenetraitassociation ? ? ? ? ? ?
pacvar ? ? ? ? ? ? ? ? ? ? ?
pathogensurveillance ? ? ? ?
phageannotator ?
radseq ? ? ? ? ? ?
rangeland ?
rnadnavar ?
sammyseq ?
scdownstream ?
seqinspector ?
spatialvi ?
spatialxe ? ? ?
spinningjenny ? ? ?
tbanalyzer ? ? ?
tfactivity ?
troughgraph ?
tumourevo ? ? ? ? ? ? ? ? ? ? ? ?
variantbenchmarking ?
variantcatalogue ?
vipr ? ?
ssds ?
smartseq2 ?
scflow ?
liverctanalysis ?
exoseq ? ? ? ? ? ? ?
denovohybrid ?
ddamsproteomics ?
crisprvar ?