Pipeline Name Released Released after tools master = release JSON Schema Dev activity DSL2 nf-test nf-test in dev Wikis Issues Merge commits Rebase merging Squash merges Default branch Keywords Description Repo URL Team access Branches exist Branch protection: master branch Branch protection: dev T push Plugins: nf-validation Plugins: nf-prov
airrflow
ampliseq
atacseq
bacass
bactmap
bamtofastq
cageseq
callingcards
chipseq
circdna
clipseq
coproid
crisprseq
cutandrun
demo
demultiplex
denovotranscript
detaxizer
diaproteomics
differentialabundance
dualrnaseq
eager
epitopeprediction
fastquorum
fetchngs
funcscan
hgtseq
hic
hicar
hlatyping
imcyto
isoseq
mag
marsseq
metaboigniter
metatdenovo
methylseq
mhcquant
mnaseseq
molkart
multiplesequencealign
nanoseq
nanostring
nascent
oncoanalyser
pairgenomealign
pangenome
pgdb
phyloplace
pixelator
proteinfold
proteomicslfq
raredisease
readsimulator
reportho
riboseq
rnafusion
rnaseq
rnasplice
rnavar
sarek
scnanoseq
scrnaseq
slamseq
smrnaseq
taxprofiler
viralintegration
viralrecon
deepvariant
kmermaid
neutronstar ?
quantms
circrna
createpanelrefs
createtaxdb
datasync
deepmodeloptim ? ? ? ? ?
drugresponseeval
fastqrepair ?
genomeannotator
genomeassembler
genomeqc ? ? ? ? ? ? ? ? ? ? ?
genomeskim
gwas
lncpipe
magmap
mcmicro
meerpipe ?
metapep
methylarray ? ? ? ? ? ? ? ? ? ? ?
omicsgenetraitassociation ? ? ? ? ?
pacvar ? ? ? ? ? ? ? ? ? ?
pathogensurveillance ? ? ?
phageannotator
phaseimpute
radseq ? ? ? ? ?
rangeland
rnadnavar
sammyseq
scdownstream
seqinspector
spatialvi
spatialxe ? ?
spinningjenny ? ?
tbanalyzer ? ?
tfactivity
troughgraph
variantbenchmarking
variantcatalogue
vipr ?
ssds
smartseq2
scflow
liverctanalysis
exoseq ? ? ? ? ? ?
denovohybrid
ddamsproteomics
crisprvar