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Pipelines
| Pipeline Name |
Released | Released after tools | Wikis | Issues | Merge commits | Rebase merging | Squash merges | Default branch | Keywords | Description | Repo URL | Social preview | Team access | Branches exist | Branch protection: master | Branch protection: dev |
| ampliseq |
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| artic |
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| atacseq |
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| bacass |
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| bactmap |
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| bcellmagic |
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| cageseq |
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| chipseq |
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| coproid |
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| covid19 |
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| crisprvar |
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| ddamsproteomics |
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| deepvariant |
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| demultiplex |
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| denovohybrid |
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| diaproteomics |
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| epitopeprediction |
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| guideseq |
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| hic |
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| hlatyping |
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| imcyto |
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| kmermaid |
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| lncpipe |
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| mag |
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| metaboigniter |
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| methylseq |
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| mhcquant |
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| mnaseseq |
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| nanoseq |
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| nascent |
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| neutronstar |
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| proteomicslfq |
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| rnafusion |
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| rnaseq |
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| sarek |
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| scrnaseq |
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| slamseq |
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| smartseq2 |
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| smrnaseq |
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| vipr |
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| viralrecon |
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Core repos
| Pipeline Name |
Wikis | Issues | Merge commits | Rebase merging | Squash merges | Default branch | Keywords | Description | Repo URL | Social preview | Team all | Team core | master: exists |
| configs |
|
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| dsl2pipelinetest |
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| logos |
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| modules |
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| nf-co.re |
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| test-datasets |
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| tools |
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