Nextflow Version Distribution

(latest releases only)

Version Count
>=25.10.4
0
>=25.10.3
0
>=25.10.2
6
>=25.10.0
4
>=25.04.8
3
>=25.04.6
1
>=25.04.4
0
>=25.04.3
1
>=25.04.2
6
>=25.04.0
19
>=24.10.5
5
>=24.10.1
1
>=24.04.2
13
>=23.10.0
1
>=23.04.0
12
>=22.10.1
3
>=21.10.3
1
>=21.04.0
1
>=20.10.0
1
>=20.07.1
2
>=20.04.0
4
>=19.10.0
3
nf-core Tools Version Distribution

(latest releases only)

Version Count
3.5.2
8
3.5.1
22
3.4.1
9
3.3.2
5
3.3.1
2
3.2.1
3
3.2.0
6
3.1.2
0
3.1.1
1
3.0.2
3
2.14.1
3
<2.14.1
27
Showing 134 latest releases (674 hidden)
Pipeline Release Nextflow Version nf-core Version Published Date
abotyper dev >=25.04.0 v3.5.2 Apr 2, 2026
airrflow dev >=25.04.0 v3.5.1 Mar 18, 2026
airrflow 5.0.0 >=25.04.0 v3.5.1 Feb 2, 2026
airrflow 4.3.1 >=24.04.2 v3.2.0 Jun 9, 2025
airrflow 4.3.0 >=24.04.2 v3.2.0 Apr 30, 2025
airrflow 4.2.0 >=24.04.2 v3.0.2 Dec 11, 2024
airrflow 4.1.0 >=23.04.0 v2.14.1 Jun 1, 2024
airrflow 4.0 >=23.04.0 <2.14.1 Apr 23, 2024
airrflow 3.3.0 >=23.04.0 <2.14.1 Apr 1, 2024
airrflow 3.2.0 >=23.04.0 <2.14.1 Oct 27, 2023
airrflow 3.1.0 >=22.10.1 <2.14.1 Jun 5, 2023
airrflow 3.0 >=22.10.1 <2.14.1 Mar 20, 2023
airrflow 2.4.0 >=21.10.3 <2.14.1 Dec 6, 2022
airrflow 2.3.0 >=21.10.3 <2.14.1 Sep 16, 2022
airrflow 2.2.0 >=21.10.3 <2.14.1 Jun 3, 2022
airrflow 2.1.0 >=21.10.3 <2.14.1 May 2, 2022
airrflow 2.0.0 >=21.04.0 <2.14.1 Jul 19, 2021
airrflow 1.2.0 >=19.04.0 <2.14.1 Jan 14, 2020
airrflow 1.1.0 >=19.04.0 <2.14.1 Nov 8, 2019
airrflow 1.0.0 >=0.32.0 <2.14.1 Apr 16, 2019
alleleexpression dev >=23.04.0 v3.3.1 Jan 13, 2026
ampliseq dev >=25.04.8 v3.5.1 Mar 31, 2026
ampliseq 2.16.1 >=25.04.8 v3.5.1 Jan 23, 2026
ampliseq 2.16.0 >=25.04.8 v3.5.1 Jan 16, 2026
ampliseq 2.15.0 >=24.10.5 v3.3.2 Oct 6, 2025
ampliseq 2.14.0 >=24.04.2 v3.2.1 May 23, 2025
ampliseq 2.13.0 >=24.04.2 v3.2.0 Apr 4, 2025
ampliseq 2.12.0 >=24.04.2 v3.0.2 Nov 15, 2024
ampliseq 2.11.0 >=23.04.0 v2.14.1 Aug 5, 2024
ampliseq 2.10.0 >=23.04.0 v2.14.1 Jun 27, 2024
ampliseq 2.9.0 >=23.04.0 <2.14.1 Apr 3, 2024
ampliseq 2.8.0 >=23.04.0 <2.14.1 Jan 16, 2024
ampliseq 2.7.1 >=23.04.0 <2.14.1 Nov 13, 2023
ampliseq 2.7.0 >=23.04.0 <2.14.1 Oct 19, 2023
ampliseq 2.6.1 >=23.04.0 <2.14.1 Jun 28, 2023
ampliseq 2.6.0 >=22.10.1 <2.14.1 Jun 27, 2023
ampliseq 2.5.0 >=22.10.1 <2.14.1 Mar 2, 2023
ampliseq 2.4.1 >=21.10.3 <2.14.1 Dec 7, 2022
ampliseq 2.4.0 >=21.10.3 <2.14.1 Sep 7, 2022
ampliseq 2.3.2 >=21.10.3 <2.14.1 May 27, 2022
ampliseq 2.3.1 >=21.10.3 <2.14.1 Apr 5, 2022
ampliseq 2.3.0 >=21.10.3 <2.14.1 Apr 4, 2022
ampliseq 2.2.0 >=21.10.3 <2.14.1 Jan 31, 2022
ampliseq 2.1.1 >=21.04.0 <2.14.1 Oct 28, 2021
ampliseq 2.1.0 >=21.04.0 <2.14.1 Sep 14, 2021
ampliseq 2.0.0 >=21.04.0 <2.14.1 Jun 29, 2021
ampliseq 1.2.0 >=20.04.0 <2.14.1 Feb 4, 2021
ampliseq 1.1.3 >=19.10.0 <2.14.1 Nov 2, 2020
ampliseq 1.1.2 >=19.10.0 <2.14.1 Dec 19, 2019
ampliseq 1.1.1 >=19.10.0 <2.14.1 Dec 9, 2019
ampliseq 1.1.0 >=18.10.1 <2.14.1 Jul 15, 2019
ampliseq 1.0.0 >=18.10.1 <2.14.1 Dec 13, 2018
atacseq dev >=25.04.0 v3.5.1 Mar 24, 2026
atacseq 2.1.2 >=23.04.0 <2.14.1 Aug 7, 2023
atacseq 2.1.1 >=23.04.0 <2.14.1 Jul 21, 2023
atacseq 2.1.0 >=23.04.0 <2.14.1 Jul 21, 2023
atacseq 2.0 >=21.10.3 <2.14.1 Nov 30, 2022
atacseq 1.2.2 >=19.10.0 <2.14.1 May 12, 2022
atacseq 1.2.1 >=19.10.0 <2.14.1 Jul 29, 2020
atacseq 1.2.0 >=19.10.0 <2.14.1 Jul 2, 2020
atacseq 1.1.0 >=19.10.0 <2.14.1 Nov 5, 2019
atacseq 1.0.0 >=0.32.0 <2.14.1 Apr 9, 2019
bacass dev >=25.04.0 v3.5.1 Mar 24, 2026
bacass 2.5.0 >=24.10.5 v3.3.2 Oct 17, 2025
bacass 2.4.0 >=24.04.2 v3.0.2 Nov 18, 2024
bacass 2.3.1 >=23.04.0 v2.14.1 Jun 24, 2024
bacass 2.3.0 >=23.04.0 v2.14.1 Jun 12, 2024
bacass 2.2.0 >=23.04.0 <2.14.1 Apr 17, 2024
bacass 2.1.0 >=23.04.0 <2.14.1 Oct 24, 2023
bacass 2.0.0 >=21.04.0 <2.14.1 Aug 27, 2021
bacass 1.1.1 >=19.10.0 <2.14.1 Nov 5, 2020
bacass 1.1.0 >=19.10.0 <2.14.1 Dec 13, 2019
bacass 1.0.0 >=18.10.1 <2.14.1 May 6, 2019
bactmap dev >=25.10.0 v3.5.2 Mar 3, 2026
bactmap 1.0.0 >=21.04.0 <2.14.1 Jun 18, 2021
bactmap 0.9.1 >=20.11.0-edge <2.14.1 May 10, 2021
bactmap v0.9 >=20.11.0-edge <2.14.1 May 8, 2021
bamtofastq dev >=25.10.2 v3.5.1 Jan 22, 2026
bamtofastq 2.2.0 >=24.04.2 v3.3.1 Jun 17, 2025
bamtofastq 2.1.1 >=23.04.0 <2.14.1 May 6, 2024
bamtofastq 2.1.0 >=23.04.0 <2.14.1 Oct 6, 2023
bamtofastq 2.0.0 >=22.10.1 <2.14.1 May 31, 2023
bamtofastq 1.2.0 >=20.04.1 <2.14.1 Jan 13, 2022
bamtofastq 1.1.0 >=20.04.1 <2.14.1 Apr 22, 2021
bamtofastq 1.0.0 >=20.04.1 <2.14.1 Sep 10, 2020
cageseq dev >=25.04.0 v3.5.2 Mar 24, 2026
cageseq 1.0.2 >=20.04.0 <2.14.1 Jan 14, 2021
cageseq 1.0.1 >=20.04.0 <2.14.1 Nov 23, 2020
cageseq 1.0.0 >=19.10.0 <2.14.1 Oct 16, 2020
callingcards dev >=24.04.2 v3.2.1 May 13, 2025
callingcards 1.0.0 >=23.04.0 v2.14.1 May 24, 2024
cellpainting dev >=24.10.5 v3.3.2 Apr 1, 2026
chipseq dev >=25.04.0 v3.5.2 Mar 29, 2026
chipseq 2.1.0 >=23.04.0 v2.14.1 Oct 7, 2024
chipseq 2.0.0 >=21.10.3 <2.14.1 Oct 3, 2022
chipseq 1.2.2 >=19.10.0 <2.14.1 Apr 22, 2021
chipseq 1.2.1 >=19.10.0 <2.14.1 Jul 29, 2020
chipseq 1.2.0 >=19.10.0 <2.14.1 Jul 2, 2020
chipseq 1.1.0 >=19.10.0 <2.14.1 Nov 5, 2019
chipseq 1.0.0 >=0.32.0 <2.14.1 Jun 6, 2019
circdna dev >=23.04.0 <2.14.1 Feb 8, 2024
circdna 1.1.0 >=23.04.0 <2.14.1 Feb 10, 2024
circdna 1.0.4 >=22.10.1 <2.14.1 Jun 27, 2023
circdna 1.0.3 >=22.10.1 <2.14.1 Jun 5, 2023
circdna 1.0.3dev-alpha >=22.10.1 <2.14.1 May 17, 2023
circdna 1.0.3dev >=22.10.1 <2.14.1 May 17, 2023
circdna 1.0.2 >=22.10.1 <2.14.1 Mar 9, 2023
circdna 1.0.1 >=21.10.3 <2.14.1 Jun 22, 2022
circdna 1.0.0 >=21.10.3 <2.14.1 Jun 1, 2022
circrna dev >=25.04.0 v3.5.1 Mar 30, 2026
clipseq dev >=20.04.0 <2.14.1 Mar 15, 2023
clipseq 1.0.0 >=20.04.0 <2.14.1 Apr 27, 2021
coproid dev >=25.04.0 v3.5.2 Feb 15, 2026
coproid 2.0.1 >=25.04.0 v3.5.2 Feb 17, 2026
coproid 2.0.0 >=24.10.0 v3.2.0 May 22, 2025
coproid 1.1.1 >=19.10.0 <2.14.1 Nov 4, 2022
coproid 1.1 >=19.10.0 <2.14.1 Apr 29, 2020
coproid 1.0 >=0.32.0 <2.14.1 Apr 29, 2019
createpanelrefs dev >=25.04.0 v3.5.1 Feb 11, 2026
createtaxdb dev >=25.04.2 v3.5.1 Feb 11, 2026
createtaxdb 2.1.0 >=25.04.2 v3.5.1 Feb 10, 2026
createtaxdb 2.0.0 >=25.04.2 v3.4.1 Nov 14, 2025
createtaxdb 1.0.0 >=24.04.2 v3.3.1 Jun 19, 2025
crisprseq dev >=25.04.0 v3.5.1 Mar 6, 2026
crisprseq 2.3.0 >=24.04.2 v3.0.2 Nov 8, 2024
crisprseq 2.2.1 >=23.04.0 v2.14.1 Jul 23, 2024
crisprseq 2.2.0 >=23.04.0 v2.14.1 Jun 20, 2024
crisprseq 2.1.1 >=23.04.0 <2.14.1 Dec 18, 2023
crisprseq 2.1.0 >=23.04.0 <2.14.1 Nov 14, 2023
crisprseq 2.0.0 >=23.04.0 <2.14.1 Jul 5, 2023
crisprseq 1.0 >=22.10.1 <2.14.1 Feb 2, 2023
cutandrun dev >=25.04.0 v3.4.1 Nov 27, 2025
cutandrun 3.2.2 >=23.04.0 <2.14.1 Feb 1, 2024
cutandrun 3.2.1 >=23.04.0 <2.14.1 Oct 25, 2023
cutandrun 3.2 >=23.04.0 <2.14.1 Aug 31, 2023
cutandrun 3.1 >=22.10.1 <2.14.1 Mar 10, 2023
cutandrun 3.0 >=21.10.3 <2.14.1 Oct 27, 2022
cutandrun 2.0 >=21.10.3 <2.14.1 Jun 8, 2022
cutandrun 1.1 >=21.10.3 <2.14.1 Jan 20, 2022
cutandrun 1.0.0 >=21.04.0 <2.14.1 Nov 6, 2021
datasync dev >=24.04.2 v3.0.2 Dec 11, 2024
deepmodeloptim dev >=24.04.2 v3.2.0 Jun 26, 2025
deepmutscan dev >=25.04.4 v3.5.2 Mar 20, 2026
demo dev >=25.10.2 v3.5.1 Mar 11, 2026
demo 1.1.0 >=25.10.2 v3.5.1 Jan 30, 2026
demo 1.0.2 >=24.04.2 v3.3.1 Jun 27, 2025
demo 1.0.1 >=24.04.2 v3.0.2 Oct 18, 2024
demo 1.0.0 >=23.04.0 v2.14.1 Jun 20, 2024
demultiplex dev >=25.10.2 v3.5.2 Mar 26, 2026
demultiplex 1.7.0 >=25.04.0 v3.4.1 Oct 28, 2025
demultiplex 1.6.1 >=24.04.2 v3.2.0 Apr 24, 2025
demultiplex 1.6.0 >=24.04.2 v3.0.2 Feb 19, 2025
demultiplex 1.5.4 >=24.04.2 v3.0.2 Dec 10, 2024
demultiplex 1.5.3 >=24.04.2 v3.0.2 Nov 6, 2024
demultiplex 1.5.2 >=23.04.0 v2.14.1 Oct 7, 2024
demultiplex 1.5.1 >=23.04.0 v2.14.1 Aug 20, 2024
demultiplex 1.5.0 >=23.04.0 v2.14.1 Aug 13, 2024
demultiplex 1.4.1 >=23.04.0 <2.14.1 Feb 27, 2024
demultiplex 1.4.0 >=23.04.0 <2.14.1 Dec 15, 2023
demultiplex 1.3.2 >=22.10.1 <2.14.1 Jun 7, 2023
demultiplex 1.3.1 >=22.10.1 <2.14.1 Jun 5, 2023
demultiplex 1.3.0 >=22.10.1 <2.14.1 May 31, 2023
demultiplex 1.2.0 >=22.10.1 <2.14.1 Apr 25, 2023
demultiplex 1.1.0 >=22.10.1 <2.14.1 Jan 23, 2023
demultiplex 1.0.0 >=21.10.3 <2.14.1 Oct 6, 2022
denovotranscript dev >=24.04.2 v3.2.1 May 27, 2025
denovotranscript 1.2.1 >=24.04.2 v3.2.0 Aug 28, 2025
denovotranscript 1.2.0 >=24.04.2 v3.2.0 Jan 30, 2025
denovotranscript 1.1.0 >=24.04.2 v3.0.2 Nov 29, 2024
denovotranscript 1.0.0 >=23.04.0 v2.14.1 Aug 15, 2024
detaxizer dev >=25.04.8 v3.4.1 Nov 17, 2025
detaxizer 1.3.0 >=25.04.8 v3.4.1 Nov 14, 2025
detaxizer 1.2.0 >=24.10.5 v3.3.2 Aug 7, 2025
detaxizer 1.1.0 >=24.04.2 v3.0.2 Nov 8, 2024
detaxizer 1.0.0 >=23.04.0 <2.14.1 Mar 26, 2024
diaproteomics dev >=20.04.0 <2.14.1 Jan 13, 2025
diaproteomics 1.2.4 >=20.04.0 <2.14.1 Apr 29, 2021
diaproteomics 1.2.3 >=20.04.0 <2.14.1 Apr 26, 2021
diaproteomics 1.2.2 >=20.04.0 <2.14.1 Feb 24, 2021
diaproteomics 1.2.1 >=20.04.0 <2.14.1 Feb 18, 2021
diaproteomics 1.2.0 >=20.04.0 <2.14.1 Feb 17, 2021
diaproteomics 1.1.0 >=20.04.0 <2.14.1 Dec 3, 2020
diaproteomics 1.0.0 >=19.10.0 <2.14.1 Nov 13, 2020
differentialabundance dev >=25.10.3 v3.5.1 Apr 1, 2026
differentialabundance 1.5.0 >=23.10.0 <2.14.1 May 8, 2024
differentialabundance 1.4.0 >=23.10.0 <2.14.1 Nov 27, 2023
differentialabundance 1.3.1 >=23.04.0 <2.14.1 Oct 27, 2023
differentialabundance 1.3.0 >=23.04.0 <2.14.1 Oct 24, 2023
differentialabundance 1.2.0 >=22.10.1 <2.14.1 Apr 19, 2023
differentialabundance 1.1.1 >=22.10.1 <2.14.1 Mar 3, 2023
differentialabundance 1.1.0 >=22.10.1 <2.14.1 Feb 24, 2023
differentialabundance 1.0.1 >=22.10.1 <2.14.1 Jan 25, 2023
differentialabundance 1.0.0 >=22.10.1 <2.14.1 Jan 24, 2023
diseasemodulediscovery dev >=25.04.0 v3.5.1 Jan 30, 2026
drop dev >=25.10.0 v3.5.2 Apr 2, 2026
drop 1.0.0 >=25.10.0 v3.5.2 Apr 2, 2026
drugresponseeval dev >=25.10.0 v3.5.1 Jan 22, 2026
drugresponseeval 1.2.0 >=25.10.0 v3.5.1 Jan 20, 2026
drugresponseeval 1.1.0 >=24.04.2 v3.3.1 Jul 3, 2025
drugresponseeval 1.0.0 >=24.04.2 v3.2.0 Jan 31, 2025
dualrnaseq dev >=24.04.2 v3.2.0 Jun 26, 2025
dualrnaseq 1.0.0 >=20.10.0 <2.14.1 Feb 14, 2021
eager dev >=25.10.2 v3.5.1 Jan 30, 2026
eager 2.5.3 >=20.07.1 <2.14.1 Mar 18, 2025
eager 2.5.2 >=20.07.1 <2.14.1 Jun 28, 2024
eager 2.5.1 >=20.07.1 <2.14.1 Feb 21, 2024
eager 2.5.0 >=20.07.1 <2.14.1 Nov 7, 2023
eager 2.4.7 >=20.07.1 <2.14.1 May 16, 2023
eager 2.4.6 >=20.07.1 <2.14.1 Nov 17, 2022
eager 2.4.5 >=20.07.1 <2.14.1 Aug 2, 2022
eager 2.4.4 >=20.07.1 <2.14.1 Apr 8, 2022
eager 2.4.3 >=20.07.1 <2.14.1 Mar 24, 2022
eager 2.4.2 >=20.07.1 <2.14.1 Jan 24, 2022
eager 2.4.1 >=20.07.1 <2.14.1 Nov 30, 2021
eager 2.4.0 >=20.07.1 <2.14.1 Sep 14, 2021
eager 2.3.5 >=20.07.1 <2.14.1 Jun 4, 2021
eager 2.3.4 >=20.07.1 <2.14.1 May 5, 2021
eager 2.3.3 >=20.07.1 <2.14.1 Apr 8, 2021
eager 2.3.2 >=20.07.1 <2.14.1 Mar 16, 2021
eager 2.3.1 >=20.04.0 <2.14.1 Jan 14, 2021
eager 2.3.0 >=20.04.0 <2.14.1 Jan 11, 2021
eager 2.2.2 >=20.04.0 <2.14.1 Dec 9, 2020
eager 2.2.1 >=20.04.0 <2.14.1 Oct 29, 2020
eager 2.2.0 >=20.04.0 <2.14.1 Oct 21, 2020
eager 2.1.0 >=19.10.0 <2.14.1 Mar 5, 2020
eager 2.0.7 >=0.32.0 <2.14.1 Jun 10, 2019
eager 2.0.6 >=0.32.0 <2.14.1 Mar 6, 2019
eager 2.0.5 >=0.32.0 <2.14.1 Jan 30, 2019
eager 2.0.4 >=0.32.0 <2.14.1 Jan 9, 2019
eager 2.0.3 >=0.32.0 <2.14.1 Dec 12, 2018
eager 2.0.2 >=0.32.0 <2.14.1 Nov 3, 2018
eager 2.0.1 >=0.32.0 <2.14.1 Nov 2, 2018
eager 2.0.0 >=0.32.0 <2.14.1 Oct 17, 2018
epitopeprediction dev >=25.04.0 v3.5.2 Apr 1, 2026
epitopeprediction 3.1.0 >=25.04.0 v3.4.1 Nov 21, 2025
epitopeprediction 3.0.0 >=24.04.2 v3.2.1 May 9, 2025
epitopeprediction 2.3.1 >=23.04.0 v2.14.1 May 17, 2024
epitopeprediction 2.3.0 >=23.04.0 <2.14.1 Feb 26, 2024
epitopeprediction 2.2.1 >=22.10.1 <2.14.1 Mar 17, 2023
epitopeprediction 2.2.0 >=22.10.1 <2.14.1 Mar 3, 2023
epitopeprediction 2.1.0 >=21.10.3 <2.14.1 Aug 4, 2022
epitopeprediction 2.0.0 >=21.10.3 <2.14.1 Dec 21, 2021
epitopeprediction 1.1.0 >=19.10.0 <2.14.1 Oct 20, 2020
epitopeprediction 1.0.0 >=19.10.0 <2.14.1 Dec 5, 2019
evexplorer dev >=23.04.0 v2.14.1 May 5, 2025
fastqrepair dev >=24.10.5 v3.3.2 Aug 20, 2025
fastqrepair 1.0.0 >=24.04.2 v3.2.0 Feb 3, 2025
fastquorum dev >=25.04.0 v3.5.2 Mar 27, 2026
fastquorum 1.2.0 >=24.04.2 v3.2.0 Apr 11, 2025
fastquorum 1.1.0 >=24.04.2 v3.0.2 Dec 2, 2024
fastquorum 1.0.1 >=23.04.0 v2.14.1 Sep 11, 2024
fastquorum 1.0.0 >=23.04.0 v2.14.1 May 23, 2024
fetchngs dev >=24.10.5 v3.3.2 Oct 17, 2025
fetchngs 1.12.0 >=23.04.0 <2.14.1 Feb 29, 2024
fetchngs 1.11.0 >=23.04.0 <2.14.1 Oct 18, 2023
fetchngs 1.10.1 >=23.04.0 <2.14.1 Oct 8, 2023
fetchngs 1.10.0 >=22.10.1 <2.14.1 May 16, 2023
fetchngs 1.9 >=22.10.1 <2.14.1 Dec 21, 2022
fetchngs 1.8 >=21.10.3 <2.14.1 Nov 8, 2022
fetchngs 1.7 >=21.10.3 <2.14.1 Jul 1, 2022
fetchngs 1.6 >=21.10.3 <2.14.1 May 17, 2022
fetchngs 1.5 >=21.10.3 <2.14.1 Dec 1, 2021
fetchngs 1.4 >=21.04.0 <2.14.1 Nov 9, 2021
fetchngs 1.3 >=21.04.0 <2.14.1 Sep 15, 2021
fetchngs 1.2 >=21.04.0 <2.14.1 Jul 28, 2021
fetchngs 1.1 >=21.04.0 <2.14.1 Jun 22, 2021
fetchngs 1.0 >=21.04.0 <2.14.1 Jun 8, 2021
funcprofiler dev >=24.10.5 v3.5.2 Apr 2, 2026
funcscan dev >=25.04.0 v3.5.2 Mar 24, 2026
funcscan 3.0.0 >=24.10.5 v3.3.2 Oct 4, 2025
funcscan 2.1.0 >=24.04.2 v3.2.0 Mar 5, 2025
funcscan 2.0.0 >=23.04.0 v2.14.1 Sep 5, 2024
funcscan 1.1.6 >=23.04.0 <2.14.1 Jul 8, 2024
funcscan 1.1.5 >=23.04.0 <2.14.1 Mar 20, 2024
funcscan 1.1.4 >=23.04.0 <2.14.1 Nov 7, 2023
funcscan 1.1.3 >=23.04.0 <2.14.1 Aug 11, 2023
funcscan 1.1.2 >=22.10.1 <2.14.1 Jun 30, 2023
funcscan 1.1.1 >=22.10.1 <2.14.1 May 24, 2023
funcscan 1.1.0 >=22.10.1 <2.14.1 Apr 27, 2023
funcscan 1.0.1 >=22.10.1 <2.14.1 Feb 27, 2023
funcscan 1.0.0 >=22.10.1 <2.14.1 Feb 15, 2023
genephylomodeler dev >=25.04.0 v3.4.1 Mar 18, 2026
genomeannotator dev >=21.10.3 <2.14.1 Mar 29, 2022
genomeassembler dev >=25.04.0 v3.5.1 Nov 20, 2025
genomeassembler 1.1.0 >=24.10.5 v3.3.2 Jul 21, 2025
genomeassembler 1.0.1 >=24.04.2 v3.2.0 Mar 19, 2025
genomeassembler 1.0.0 >=24.04.2 v3.2.0 Mar 7, 2025
genomeqc dev >=25.04.0 v3.5.2 Mar 24, 2026
genomeskim dev >=21.10.3 <2.14.1 Aug 9, 2022
genomicrelatedness dev >=25.04.0 v3.5.1 Mar 25, 2026
gwas dev >=25.04.0 v3.5.2 Mar 16, 2026
hadge dev >=25.04.0 v3.5.2 Feb 22, 2026
hadge 0.2.0 - <2.14.1 Mar 28, 2024
hadge 0.1.0 - <2.14.1 Feb 8, 2024
hgtseq dev >=24.04.2 v3.3.2 Nov 14, 2025
hgtseq 1.1.0 >=22.10.1 <2.14.1 May 16, 2023
hgtseq 1.0.0 >=21.10.3 <2.14.1 Oct 24, 2022
hic dev >=25.04.0 v3.5.1 Mar 6, 2026
hic 2.1.0 >=22.10.1 <2.14.1 Jun 1, 2023
hic 2.0.0 >=22.10.1 <2.14.1 Jan 21, 2023
hic 1.3.0 >=20.04.0 <2.14.1 May 25, 2021
hic 1.2.2 >=19.10.0 <2.14.1 Sep 3, 2020
hic 1.2.1 >=19.10.0 <2.14.1 Jul 9, 2020
hic 1.2.0 >=19.10.0 <2.14.1 Jul 9, 2020
hic 1.1.0 >=19.04.0 <2.14.1 Oct 23, 2019
hic 1.0.0 >=0.32.0 <2.14.1 May 6, 2019
hicar dev >=23.04.0 <2.14.1 Jul 19, 2023
hicar 1.0.0 >=21.10.3 <2.14.1 May 3, 2022
hlatyping dev >=25.04.2 v3.5.1 Feb 27, 2026
hlatyping 2.2.0 >=25.04.2 v3.5.1 Feb 2, 2026
hlatyping 2.1.0 >=24.04.2 v3.2.0 Apr 14, 2025
hlatyping 2.0.0 >=21.10.3 <2.14.1 Oct 18, 2022
hlatyping 1.2.0 >=19.10.0 <2.14.1 Aug 21, 2020
hlatyping 1.1.5 >=18.10.1 <2.14.1 Jun 27, 2019
hlatyping 1.1.4 >=18.10.1 <2.14.1 Mar 7, 2019
hlatyping 1.1.3 >=18.10.1 <2.14.1 Feb 4, 2019
hlatyping 1.1.2 >=0.31.0 <2.14.1 Dec 12, 2018
hlatyping 1.1.1 >=0.31.0 <2.14.1 Aug 21, 2018
hlatyping 1.1.0 >=0.31.0 <2.14.1 Aug 15, 2018
hlatyping 1.0.0 - <2.14.1 Jul 18, 2018
hlatyping 1.0.0-rc1 - <2.14.1 Jul 18, 2018
imcyto dev >=21.10.3 <2.14.1 Jul 20, 2022
imcyto 1.0.0 >=19.10.0 <2.14.1 May 29, 2020
isoseq dev >=25.04.0 v3.4.1 Oct 30, 2025
isoseq 2.0.0 >=23.04.0 v2.14.1 Sep 5, 2024
isoseq 1.1.5 >=23.04.0 <2.14.1 Sep 4, 2023
isoseq 1.1.4 >=22.10.1 <2.14.1 Mar 13, 2023
isoseq 1.1.3 >=22.10.1 <2.14.1 Mar 9, 2023
isoseq 1.1.2 >=22.10.1 <2.14.1 Jan 12, 2023
isoseq 1.1.1 >=21.10.3 <2.14.1 Sep 27, 2022
isoseq 1.1.0 >=21.10.3 <2.14.1 Jul 12, 2022
isoseq 1.0.0 >=21.10.3 <2.14.1 Jun 28, 2022
kmermaid dev >=24.04.2 v3.1.1 Jan 13, 2025
kmermaid 0.1.0-alpha >=20.07.1 <2.14.1 Oct 27, 2020
lncpipe dev >=24.04.2 v3.2.0 Apr 4, 2025
longraredisease dev >=25.04.6 v3.5.1 Mar 25, 2026
longraredisease v1.0.0-alpha - <2.14.1 Aug 22, 2025
lsmquant dev >=25.04.0 v3.5.1 Mar 23, 2026
mag dev >=25.04.2 v3.5.2 Apr 2, 2026
mag 5.4.2 >=25.04.2 v3.5.2 Mar 31, 2026
mag 5.4.1 >=25.04.2 v3.5.2 Mar 12, 2026
mag 5.4.0 >=25.04.2 v3.5.1 Feb 2, 2026
mag 5.3.0 >=25.04.2 v3.5.1 Dec 5, 2025
mag 5.2.0 >=25.04.2 v3.4.1 Nov 7, 2025
mag 5.1.0 >=25.04.2 v3.4.1 Oct 27, 2025
mag 5.0.0 >=25.04.2 v3.3.2 Sep 30, 2025
mag 4.0.0 >=25.04.2 v3.2.1 May 22, 2025
mag 3.4.0 >=24.04.2 v3.2.0 Apr 4, 2025
mag 3.3.1 >=24.04.2 v3.2.0 Feb 13, 2025
mag 3.3.0 >=24.04.2 v3.1.0 Dec 19, 2024
mag 3.2.1 >=24.04.2 v3.0.2 Oct 30, 2024
mag 3.2.0 >=24.04.2 v3.0.2 Oct 27, 2024
mag 3.1.0 >=23.04.0 v2.14.1 Oct 4, 2024
mag 3.0.3 >=23.04.0 v2.14.1 Aug 27, 2024
mag 3.0.2 >=23.04.0 v2.14.1 Jul 4, 2024
mag 3.0.1 >=23.04.0 v2.14.1 Jun 10, 2024
mag 3.0.0 - v2.14.1 May 13, 2024
mag 2.5.4 >=23.04.0 <2.14.1 Feb 12, 2024
mag 2.5.3 >=23.04.0 <2.14.1 Feb 5, 2024
mag 2.5.2 >=23.04.0 <2.14.1 Feb 2, 2024
mag 2.5.1 >=23.04.0 <2.14.1 Nov 17, 2023
mag 2.5.0 >=23.04.0 <2.14.1 Oct 10, 2023
mag 2.4.0 >=23.04.0 <2.14.1 Sep 26, 2023
mag 2.3.2 >=22.10.1 <2.14.1 Jun 23, 2023
mag 2.3.1 >=22.10.1 <2.14.1 Jun 19, 2023
mag 2.3.0 >=22.10.1 <2.14.1 Mar 2, 2023
mag 2.2.1 >=21.10.3 <2.14.1 Aug 25, 2022
mag 2.2.0 >=21.10.3 <2.14.1 Jun 14, 2022
mag 2.1.1 >=21.04.0 <2.14.1 Nov 26, 2021
mag 2.1.0 >=21.04.0 <2.14.1 Jul 29, 2021
mag 2.0.0 >=21.04.0 <2.14.1 Jun 1, 2021
mag 1.2.0 >=20.04.0 <2.14.1 Feb 10, 2021
mag 1.1.2 >=20.04.0 <2.14.1 Nov 24, 2020
mag 1.1.1 >=19.10.0 <2.14.1 Nov 10, 2020
mag 1.1.0 >=19.10.0 <2.14.1 Oct 6, 2020
mag 1.0.0 >=19.01.0 <2.14.1 Dec 21, 2019
magmap dev >=25.04.0 v3.5.2 Apr 3, 2026
magmap 1.0.0 >=25.04.0 v3.5.1 Nov 28, 2025
marsseq dev >=24.04.2 v3.0.2 Jun 2, 2025
marsseq 1.0.3 >=23.04.0 <2.14.1 Jul 18, 2023
marsseq 1.0.2 >=23.04.0 <2.14.1 Jul 11, 2023
marsseq 1.0.1 >=23.04.0 <2.14.1 Jun 26, 2023
marsseq 1.0.0 >=23.04.0 <2.14.1 Jun 21, 2023
marsseq v0.1 >=21.04.0 <2.14.1 May 18, 2023
mcmicro dev >=25.04.0 v3.5.1 Feb 28, 2026
meerpipe dev >=23.04.0 <2.14.1 Jan 28, 2026
metaboigniter dev >=23.04.0 v2.14.1 May 22, 2024
metaboigniter 2.0.1 >=23.04.0 <2.14.1 Apr 15, 2024
metaboigniter 2.0.0 >=23.04.0 <2.14.1 Dec 19, 2023
metaboigniter 1.0.1 >=20.04.0 <2.14.1 May 18, 2021
metaboigniter 1.0.0 >=19.10.0 <2.14.1 May 8, 2021
metapep dev >=24.10.5 v3.3.2 Mar 26, 2026
metapep 1.0.0 >=24.04.2 v3.0.2 Nov 22, 2024
metatdenovo dev >=25.04.0 v3.5.2 Mar 25, 2026
metatdenovo 1.3.0 >=24.10.5 v3.3.2 Aug 29, 2025
metatdenovo 1.2.0 >=24.04.2 v3.3.1 Jun 18, 2025
metatdenovo 1.1.1 >=24.04.2 v3.2.0 Mar 13, 2025
metatdenovo 1.1.0 >=24.04.2 v3.2.0 Feb 26, 2025
metatdenovo 1.0.1 >=23.04.0 <2.14.1 Apr 3, 2024
metatdenovo 1.0.0 >=23.04.0 <2.14.1 Feb 15, 2024
methylarray dev >=25.04.0 v3.5.1 Feb 17, 2026
methylong dev >=25.04.0 v3.5.1 Nov 20, 2025
methylong 2.0.0 >=25.04.0 v3.5.1 Nov 21, 2025
methylong 1.0.0 >=24.04.2 v3.2.1 May 8, 2025
methylseq dev >=25.04.0 v3.5.1 Dec 12, 2025
methylseq 4.2.0 >=25.04.0 v3.5.1 Dec 12, 2025
methylseq 4.1.0 >=24.10.5 v3.3.2 Aug 10, 2025
methylseq 4.0.0 >=24.10.2 v3.3.1 Jul 4, 2025
methylseq 3.0.0 >=24.10.2 v3.1.0 Dec 16, 2024
methylseq 2.7.1 >=24.04.2 v3.0.2 Oct 27, 2024
methylseq 2.7.0 >=24.04.2 v3.0.2 Oct 25, 2024
methylseq 2.6.0 >=23.04.0 <2.14.1 Jan 6, 2024
methylseq 2.5.0 >=23.04.0 <2.14.1 Oct 18, 2023
methylseq 2.4.0 >=22.10.1 <2.14.1 Jun 12, 2023
methylseq 2.3.0 >=22.10.1 <2.14.1 Dec 17, 2022
methylseq 2.2.0 >=21.10.3 <2.14.1 Nov 28, 2022
methylseq 2.1.0 >=21.10.3 <2.14.1 Nov 10, 2022
methylseq 2.0.0 >=21.10.3 <2.14.1 Nov 9, 2022
methylseq 1.6.1 >=20.07.1 <2.14.1 May 9, 2021
methylseq 1.6 >=20.07.1 <2.14.1 Mar 26, 2021
methylseq 1.5 >=19.10.0 <2.14.1 Apr 9, 2020
methylseq 1.4 >=19.04.0 <2.14.1 Nov 20, 2019
methylseq 1.3 >=0.32.0 <2.14.1 Feb 1, 2019
methylseq 1.2 >=0.32.0 <2.14.1 Jan 2, 2019
methylseq 1.1 - <2.14.1 Aug 10, 2018
methylseq 1.0 - <2.14.1 Apr 17, 2018
mhcquant dev >=25.04.0 v3.5.1 Mar 17, 2026
mhcquant 3.1.0 >=25.04.0 v3.4.1 Jan 7, 2026
mhcquant 3.0.0 >=24.04.2 v3.2.1 May 22, 2025
mhcquant 2.6.0 >=23.04.0 v2.14.1 Jun 17, 2024
mhcquant 2.5.0 >=23.04.0 <2.14.1 Oct 10, 2023
mhcquant 2.4.1 >=22.10.1 <2.14.1 Apr 6, 2023
mhcquant 2.4.0 >=21.10.3 <2.14.1 Dec 2, 2022
mhcquant 2.3.1 >=21.10.3 <2.14.1 May 10, 2022
mhcquant 2.3.0 >=21.10.3 <2.14.1 Apr 5, 2022
mhcquant 2.2.0 >=21.10.3 <2.14.1 Jan 14, 2022
mhcquant 2.1.0 >=21.10.3 <2.14.1 Dec 9, 2021
mhcquant 2.0.0 >=21.04.0 <2.14.1 Sep 3, 2021
mhcquant 1.6.0 >=19.10.0 <2.14.1 Oct 6, 2020
mhcquant 1.5.1 >=19.10.0 <2.14.1 Apr 24, 2020
mhcquant 1.5 >=19.10.0 <2.14.1 Apr 21, 2020
mhcquant 1.4 >=19.10.0 <2.14.1 Mar 23, 2020
mhcquant 1.3 >=0.32.0 <2.14.1 Aug 3, 2019
mhcquant 1.2.6 >=0.32.0 <2.14.1 Mar 5, 2019
mhcquant 1.2.5 >=0.32.0 <2.14.1 Mar 4, 2019
mhcquant 1.2.4 >=0.32.0 <2.14.1 Feb 6, 2019
mhcquant 1.2.3 >=0.32.0 <2.14.1 Feb 4, 2019
mhcquant 1.2.2 >=0.32.0 <2.14.1 Jan 28, 2019
mhcquant 1.2.1 >=0.32.0 <2.14.1 Jan 25, 2019
mhcquant 1.2.0 >=0.32.0 <2.14.1 Jan 21, 2019
mhcquant 1.1.0 >=0.32.0 <2.14.1 Jan 4, 2019
mhcquant 1.0.0 >=0.32.0 <2.14.1 Nov 27, 2018
mitodetect dev >=24.04.2 v3.2.0 Feb 11, 2025
mnaseseq dev >=19.10.0 <2.14.1 May 25, 2022
mnaseseq 1.0.0 >=19.10.0 <2.14.1 May 25, 2022
molkart dev >=25.04.0 v3.5.1 Feb 17, 2026
molkart 1.2.0 >=25.04.0 v3.4.1 Oct 27, 2025
molkart 1.1.0 >=24.04.2 v3.2.0 Mar 6, 2025
molkart 1.0.0 >=23.04.0 <2.14.1 Feb 12, 2024
multiplesequencealign dev >=25.04.2 v3.2.1 Oct 3, 2025
multiplesequencealign 1.1.1 >=25.04.2 v3.2.1 May 27, 2025
multiplesequencealign 1.1.0 >=24.10.4 v3.2.0 Feb 21, 2025
multiplesequencealign 1.0.0 >=24.04.1 v2.14.1 Oct 4, 2024
nanoseq dev >=24.04.2 v3.2.1 May 28, 2025
nanoseq 3.1.0 >=22.10.1 <2.14.1 Mar 10, 2023
nanoseq 3.0.0 >=21.10.3 <2.14.1 Jun 20, 2022
nanoseq 2.0.1 >=21.04.0 <2.14.1 Nov 30, 2021
nanoseq 2.0.0 >=21.04.0 <2.14.1 Nov 26, 2021
nanoseq 1.1.0 >=19.10.0 <2.14.1 Nov 6, 2020
nanoseq 1.0.0 >=19.10.0 <2.14.1 Mar 5, 2020
nanostring dev >=25.10.2 v3.5.1 Jan 30, 2026
nanostring 1.3.3 >=25.10.2 v3.5.1 Jan 30, 2026
nanostring 1.3.2 >=25.10.2 v3.5.1 Jan 15, 2026
nanostring 1.3.1 >=24.04.2 v3.1.2 Jan 27, 2025
nanostring 1.3.0 >=23.04.0 v2.14.1 Aug 27, 2024
nanostring 1.2.1 >=23.04.0 <2.14.1 Jan 18, 2024
nanostring 1.2.0 >=23.04.0 <2.14.1 Sep 4, 2023
nanostring 1.1.1 >=23.04.0 <2.14.1 Jun 23, 2023
nanostring 1.1.0 >=23.04.0 <2.14.1 Jun 22, 2023
nanostring 1.0.0 >=23.04.0 <2.14.1 Jun 12, 2023
nascent dev >=24.04.2 v3.2.1 Jul 13, 2025
nascent 2.3.0 >=24.04.2 v3.2.1 May 8, 2025
nascent 2.2.0 >=23.04.0 <2.14.1 Mar 5, 2024
nascent 2.1.1 >=22.10.1 <2.14.1 Feb 17, 2023
nascent 2.1.0 >=22.10.1 <2.14.1 Feb 15, 2023
nascent 2.0.0 >=21.10.6 <2.14.1 Oct 24, 2022
nascent 1.0 >=0.32.0 <2.14.1 Apr 16, 2019
ncrnannotator dev >=25.04.0 v3.5.2 Mar 23, 2026
omicsgenetraitassociation dev >=23.04.0 <2.14.1 Feb 22, 2024
oncoanalyser dev >=25.04.0 v3.5.1 Apr 2, 2026
oncoanalyser 2.3.0 >=25.04.0 v3.5.1 Dec 11, 2025
oncoanalyser 2.2.0 >=24.10.5 v3.3.2 Sep 2, 2025
oncoanalyser 2.1.0 >=24.04.2 v3.3.1 Jun 30, 2025
oncoanalyser 2.0.0 >=24.04.2 v3.0.2 Apr 10, 2025
oncoanalyser 1.0.0 >=22.10.5 v2.14.1 Aug 26, 2024
pacsomatic dev >=24.04.2 v3.1.2 Jan 26, 2026
pacvar dev >=25.10.2 v3.5.1 Mar 24, 2026
pacvar 1.0.1 >=24.04.2 v3.2.0 Mar 6, 2025
pacvar v1.0.0 >=24.04.2 v3.2.0 Feb 5, 2025
pairgenomealign dev >=25.04.0 v3.5.1 Jan 30, 2026
pairgenomealign 2.2.2 >=25.04.0 v3.5.1 Jan 30, 2026
pairgenomealign 2.2.1 >=24.10.5 v3.3.2 Aug 18, 2025
pairgenomealign 2.2.0 >=24.10.1 v3.2.1 Jul 10, 2025
pairgenomealign 2.1.0 >=24.10.1 v3.2.1 May 16, 2025
pairgenomealign 2.0.0 >=24.10.1 v3.2.0 Feb 5, 2025
pairgenomealign 1.1.1 >=24.10.1 v3.1.0 Dec 18, 2024
pairgenomealign 1.1.0 >=23.04.0 v2.14.1 Oct 10, 2024
pairgenomealign 1.0.0 >=23.04.0 v2.14.1 Aug 27, 2024
pangenome dev >=24.04.2 v3.2.1 May 15, 2025
pangenome 1.1.3 >=24.04.2 v3.2.0 Feb 9, 2025
pangenome 1.1.2 >=23.04.0 <2.14.1 Mar 25, 2024
pangenome 1.1.1 >=23.04.0 <2.14.1 Mar 15, 2024
pangenome 1.1.0 >=23.04.0 <2.14.1 Feb 28, 2024
pangenome 1.0.0 >=23.04.0 <2.14.1 Aug 1, 2023
panoramaseq dev >=24.04.2 v3.2.1 Jun 2, 2025
pathogensurveillance dev >=25.04.6 v3.5.1 Feb 13, 2026
pathogensurveillance 1.1.0 >=25.04.6 v3.5.1 Feb 13, 2026
pathogensurveillance 1.0.0 >=24.04.2 v3.3.1 Jun 27, 2025
phageannotator dev >=23.04.0 <2.14.1 Apr 18, 2024
phaseimpute dev >=25.10.0 v3.5.2 Mar 31, 2026
phaseimpute 1.1.0 >=25.04.0 v3.5.1 Dec 1, 2025
phaseimpute 1.0.0 >=24.04.2 v3.0.2 Dec 9, 2024
phyloplace dev >=24.04.2 v3.2.0 Feb 21, 2025
phyloplace 2.0.0 >=24.04.2 v3.2.0 Feb 21, 2025
phyloplace 1.0.0 >=22.10.1 <2.14.1 Feb 15, 2023
pixelator dev >=25.04.0 v3.5.2 Mar 30, 2026
pixelator 3.0.1 >=25.04.0 v3.5.2 Mar 9, 2026
pixelator 3.0.0 >=25.04.0 v3.5.2 Mar 4, 2026
pixelator 2.3.1 >=25.04.0 v3.5.1 Jan 19, 2026
pixelator 2.3.0 >=25.04.0 v3.5.1 Dec 15, 2025
pixelator 2.2.0 >=25.04.0 v3.4.1 Nov 5, 2025
pixelator 2.1.0 >=24.10.5 v3.3.2 Sep 17, 2025
pixelator 2.0.0 >=24.04.2 v3.2.1 Jun 24, 2025
pixelator 1.4.0 >=24.04.2 v3.1.1 Jan 22, 2025
pixelator 1.3.1 >=23.04.0 v2.14.1 Jul 31, 2024
pixelator 1.3.0 >=23.04.0 v2.14.1 Jul 17, 2024
pixelator 1.2.0 >=23.04.0 v2.14.1 May 28, 2024
pixelator 1.1.0 >=23.04.0 <2.14.1 Mar 29, 2024
pixelator 1.0.3 >=23.04.0 <2.14.1 Jan 22, 2024
pixelator 1.0.2 >=23.04.0 <2.14.1 Nov 20, 2023
pixelator 1.0.1 >=23.04.0 <2.14.1 Oct 27, 2023
pixelator 1.0.0 >=23.04.0 <2.14.1 Oct 17, 2023
proteinannotator dev >=25.10.0 v3.5.2 Mar 31, 2026
proteinannotator 1.0.0 >=25.10.0 v3.5.1 Feb 9, 2026
proteinfamilies dev >=25.10.0 v3.5.2 Mar 13, 2026
proteinfamilies 2.2.0 >=25.10.0 v3.5.1 Dec 19, 2025
proteinfamilies 2.1.0 >=25.10.0 v3.5.1 Nov 25, 2025
proteinfamilies 2.0.0 >=25.04.0 v3.4.1 Oct 17, 2025
proteinfamilies 1.3.1 >=24.10.5 v3.3.2 Sep 23, 2025
proteinfamilies 1.3.0 >=24.10.5 v3.3.2 Aug 6, 2025
proteinfamilies 1.2.0 >=24.04.2 v3.3.1 Jun 16, 2025
proteinfamilies 1.1.1 >=24.04.2 v3.2.1 May 20, 2025
proteinfamilies 1.1.0 >=24.04.2 v3.2.1 May 9, 2025
proteinfamilies 1.0.0 >=24.04.2 v3.2.0 Feb 17, 2025
proteinfold dev >=25.10.2 v3.5.1 Mar 27, 2026
proteinfold 2.0.0 >=25.10.2 v3.5.1 Mar 27, 2026
proteinfold 1.1.1 >=23.04.0 v2.14.1 Jul 30, 2024
proteinfold 1.1.0 >=23.04.0 v2.14.1 Jun 25, 2024
proteinfold 1.0.0 >=22.10.1 <2.14.1 Feb 10, 2023
proteogenomicsdb dev >=20.04.0 <2.14.1 Apr 27, 2021
proteogenomicsdb 1.0.0 >=20.04.0 <2.14.1 Apr 27, 2021
radseq dev >=21.10.3 <2.14.1 Nov 19, 2024
rangeland dev >=25.04.0 v3.5.1 Mar 24, 2026
rangeland 1.0.0 >=24.04.2 v3.1.1 Jan 17, 2025
raredisease dev >=25.10.4 v3.5.1 Mar 31, 2026
raredisease 2.6.0 >=24.04.2 v3.3.1 Jun 25, 2025
raredisease 2.5.0 >=24.04.2 v3.2.1 May 22, 2025
raredisease 2.4.0 >=24.04.2 v3.2.0 Feb 24, 2025
raredisease 2.3.0 >=24.04.2 v3.2.0 Feb 13, 2025
raredisease 2.2.0 >=23.04.0 v2.14.1 Sep 13, 2024
raredisease 2.1.0 >=23.04.0 v2.14.1 May 29, 2024
raredisease 2.0.1 >=23.04.0 <2.14.1 Mar 25, 2024
raredisease 2.0.0 >=23.04.0 <2.14.1 Mar 18, 2024
raredisease 1.1.1 >=23.04.0 <2.14.1 Jul 26, 2023
raredisease 1.1.0 >=23.04.0 <2.14.1 Jul 21, 2023
raredisease 1.0.0 >=22.10.1 <2.14.1 Jun 1, 2023
rarevariantburden dev >=24.04.2 v3.2.0 Nov 17, 2025
readsimulator dev >=23.04.0 <2.14.1 Apr 26, 2024
readsimulator 1.0.1 >=23.04.0 <2.14.1 Apr 26, 2024
readsimulator 1.0.0 >=23.04.0 <2.14.1 Feb 6, 2024
references dev >=25.10.0 v3.5.1 Jan 15, 2026
references 0.1 >=24.10.1 v3.0.2 Dec 30, 2024
reportho dev >=25.04.0 v3.4.1 Oct 21, 2025
reportho 1.1.0 >=25.04.0 v3.4.1 Oct 21, 2025
reportho 1.0.1 >=23.04.0 v2.14.1 Jul 18, 2024
reportho 1.0.0 >=23.04.0 v2.14.1 Jun 11, 2024
ribomsqc dev >=25.04.0 v3.5.1 Mar 13, 2026
ribomsqc 1.0.0 >=25.04.0 v3.4.1 Mar 13, 2026
riboseq dev >=25.04.8 v3.5.1 Mar 6, 2026
riboseq 1.2.0 >=25.04.8 v3.5.1 Dec 3, 2025
riboseq 1.1.0 >=24.04.2 v3.2.0 Feb 3, 2025
riboseq 1.0.1 >=23.04.0 <2.14.1 Apr 17, 2024
riboseq 1.0.0 >=23.04.0 <2.14.1 Apr 12, 2024
rnadnavar dev >=25.04.0 v3.5.1 Dec 8, 2025
rnafusion dev >=24.10.5 v3.3.2 Mar 18, 2026
rnafusion 4.1.0 >=24.10.5 v3.3.2 Mar 18, 2026
rnafusion 3.0.1b >=23.04.0 <2.14.1 Nov 14, 2025
rnafusion 4.0.0 >=24.10.5 v3.3.2 Sep 19, 2025
rnafusion 3.0.2 >=23.04.0 <2.14.1 Apr 10, 2024
rnafusion 3.0.1 >=23.04.0 <2.14.1 Nov 29, 2023
rnafusion 3.0.0 >=23.04.0 <2.14.1 Nov 27, 2023
rnafusion 2.4.0 >=23.04.0 <2.14.1 Sep 25, 2023
rnafusion 2.3.4 >=22.10.1 <2.14.1 Apr 26, 2023
rnafusion 2.3.3 >=22.10.1 <2.14.1 Apr 26, 2023
rnafusion 2.3.2 >=22.10.1 <2.14.1 Apr 26, 2023
rnafusion 2.3.1 >=22.10.1 <2.14.1 Apr 26, 2023
rnafusion 2.3.0 >=22.10.1 <2.14.1 Apr 24, 2023
rnafusion 2.2.0 >=22.10.1 <2.14.1 Mar 13, 2023
rnafusion 2.1.0 >=21.10.3 <2.14.1 Jul 12, 2022
rnafusion 2.0.0 >=21.10.3 <2.14.1 May 19, 2022
rnafusion 1.2.0 >=19.10.0 <2.14.1 Jul 15, 2020
rnafusion 1.1.0 >=19.10.0 <2.14.1 Feb 10, 2020
rnafusion 1.0.2 >=0.32.0 <2.14.1 May 16, 2019
rnafusion 1.0.1 >=0.32.0 <2.14.1 Apr 6, 2019
rnafusion 1.0 >=0.32.0 <2.14.1 Feb 14, 2019
rnaseq dev >=25.04.3 v3.5.1 Mar 31, 2026
rnaseq 3.23.0 >=25.04.3 v3.5.1 Feb 27, 2026
rnaseq 3.22.2 >=25.04.0 v3.5.1 Dec 12, 2025
rnaseq 3.22.1 >=25.04.0 v3.5.1 Dec 5, 2025
rnaseq 3.22.0 >=25.04.0 v3.5.1 Nov 27, 2025
rnaseq 3.21.0 >=24.10.5 v3.3.2 Sep 18, 2025
rnaseq 3.20.0 >=24.10.5 v3.3.2 Aug 18, 2025
rnaseq 3.19.0 >=24.04.2 v3.3.1 Jun 10, 2025
rnaseq 3.18.0 >=24.04.2 v3.0.2 Dec 20, 2024
rnaseq 3.17.0 >=24.04.2 v3.0.2 Oct 24, 2024
rnaseq 3.16.1 >=24.04.2 v3.0.2 Oct 16, 2024
rnaseq 3.16.0 >=23.04.0 v2.14.1 Oct 2, 2024
rnaseq 3.15.1 >=23.04.0 v2.14.1 Sep 16, 2024
rnaseq 3.15.0 >=23.04.0 v2.14.1 Sep 5, 2024
rnaseq 3.14.0 >=23.04.0 <2.14.1 Jan 8, 2024
rnaseq 3.13.2 >=23.04.0 <2.14.1 Nov 21, 2023
rnaseq 3.13.1 >=23.04.0 <2.14.1 Nov 17, 2023
rnaseq 3.13.0 >=23.04.0 <2.14.1 Nov 17, 2023
rnaseq 3.12.0 >=22.10.1 <2.14.1 Jun 2, 2023
rnaseq 3.11.2 >=22.10.1 <2.14.1 Apr 25, 2023
rnaseq 3.11.1 >=22.10.1 <2.14.1 Mar 31, 2023
rnaseq 3.11.0 >=22.10.1 <2.14.1 Mar 30, 2023
rnaseq 3.10.1 >=22.10.1 <2.14.1 Jan 5, 2023
rnaseq 3.10 >=22.10.1 <2.14.1 Dec 21, 2022
rnaseq 3.9 >=21.10.3 <2.14.1 Sep 30, 2022
rnaseq 3.8.1 >=21.10.3 <2.14.1 May 27, 2022
rnaseq 3.8 >=21.10.3 <2.14.1 May 25, 2022
rnaseq 3.7 >=21.10.3 <2.14.1 May 3, 2022
rnaseq 3.6 >=21.10.3 <2.14.1 Mar 4, 2022
rnaseq 3.5 >=21.10.3 <2.14.1 Dec 17, 2021
rnaseq 3.4 >=21.04.0 <2.14.1 Oct 5, 2021
rnaseq 3.3 >=21.04.0 <2.14.1 Jul 29, 2021
rnaseq 3.2 >=21.04.0 <2.14.1 Jun 18, 2021
rnaseq 3.1 >=21.04.0 <2.14.1 May 13, 2021
rnaseq 3.0 >=20.11.0-edge <2.14.1 Dec 15, 2020
rnaseq 2.0 >=20.07.1 <2.14.1 Nov 12, 2020
rnaseq 1.4.2 >=19.04.0 <2.14.1 Oct 18, 2019
rnaseq 1.4.1 >=19.04.0 <2.14.1 Oct 17, 2019
rnasplice dev >=24.04.2 v3.0.2 Dec 9, 2024
rnasplice 1.0.4 >=23.04.0 <2.14.1 May 9, 2024
rnasplice 1.0.3 >=23.04.0 <2.14.1 Feb 23, 2024
rnasplice 1.0.2 >=23.04.0 <2.14.1 Jan 8, 2024
rnasplice 1.0.1 >=23.04.0 <2.14.1 Nov 16, 2023
rnasplice 1.0.0 >=23.04.0 <2.14.1 Oct 10, 2023
rnavar dev >=25.10.2 v3.5.2 Mar 26, 2026
rnavar 1.2.3 >=25.10.2 v3.5.2 Feb 10, 2026
rnavar 1.2.2 >=25.10.2 v3.5.1 Dec 5, 2025
rnavar 1.2.1 >=24.10.5 v3.3.2 Sep 23, 2025
rnavar 1.2.0 >=24.10.5 v3.3.2 Aug 27, 2025
rnavar 1.1.1 >=24.10.5 v3.3.2 Aug 14, 2025
rnavar 1.1.0 >=24.04.2 v3.2.0 Apr 10, 2025
rnavar 1.0.0 >=21.10.3 <2.14.1 Jun 20, 2022
sammyseq dev >=25.04.0 v3.4.1 Nov 6, 2025
sarek dev >=25.10.2 v3.5.1 Apr 2, 2026
sarek 3.8.1 >=25.10.2 v3.5.1 Feb 12, 2026
sarek 3.8.0 >=25.10.2 v3.5.1 Feb 10, 2026
sarek 3.7.1 >=25.10.2 v3.5.1 Dec 11, 2025
sarek 3.7.0 >=25.10.2 v3.5.1 Dec 4, 2025
sarek 3.6.1 >=25.04.8 v3.3.2 Oct 24, 2025
sarek 3.6.0 >=24.10.5 v3.3.2 Oct 14, 2025
sarek 3.5.1 >=24.04.2 v3.0.2 Feb 18, 2025
sarek 3.5.0 >=24.04.2 v3.0.2 Dec 12, 2024
sarek 3.4.4 >=23.04.0 v2.14.1 Sep 3, 2024
sarek 3.4.3 >=23.04.0 v2.14.1 Aug 7, 2024
sarek 3.4.2 >=23.04.0 <2.14.1 May 7, 2024
sarek 3.4.1 >=23.04.0 <2.14.1 Apr 22, 2024
sarek 3.4.0 >=23.04.0 <2.14.1 Nov 15, 2023
sarek 3.3.2 >=23.04.0 <2.14.1 Oct 4, 2023
sarek 3.3.1 >=23.04.0 <2.14.1 Sep 18, 2023
sarek 3.3.0 >=23.04.0 <2.14.1 Sep 13, 2023
sarek 3.2.3 >=23.04.0 <2.14.1 Jun 22, 2023
sarek 3.2.2 >=23.04.0 <2.14.1 Jun 15, 2023
sarek 3.2.1 >=23.04.0 <2.14.1 Jun 8, 2023
sarek 3.2.0 >=22.10.1 <2.14.1 Jun 5, 2023
sarek 3.1.2 >=21.10.3 <2.14.1 Jan 5, 2023
sarek 3.1.1 >=21.10.3 <2.14.1 Nov 21, 2022
sarek 3.1 >=21.10.3 <2.14.1 Nov 16, 2022
sarek 3.0.2 >=21.10.3 <2.14.1 Sep 26, 2022
sarek 3.0.1 >=21.10.3 <2.14.1 Aug 18, 2022
sarek 3.0 >=21.10.3 <2.14.1 Jul 21, 2022
sarek 2.7.2 >=20.04.0 <2.14.1 Jun 10, 2022
sarek 2.7.1 >=20.04.0 <2.14.1 Jun 14, 2021
sarek 2.7 >=20.04.0 <2.14.1 Jan 26, 2021
sarek 2.6.1 >=19.10.0 <2.14.1 Jun 23, 2020
sarek 2.6 >=19.10.0 <2.14.1 May 24, 2020
sarek 2.5.2 >=19.10.0 <2.14.1 Dec 16, 2019
sarek 2.5.1 >=19.04.0 <2.14.1 Oct 22, 2019
sarek 2.5 >=19.04.0 <2.14.1 Oct 8, 2019
scdownstream dev >=25.10.0 v3.5.2 Apr 2, 2026
scnanoseq dev >=24.04.2 v3.2.1 Mar 12, 2026
scnanoseq 1.2.2 >=24.04.2 v3.2.1 Mar 9, 2026
scnanoseq 1.2.1 >=24.04.2 v3.2.1 Sep 2, 2025
scnanoseq 1.2.0 >=24.04.2 v3.2.1 Jun 9, 2025
scnanoseq 1.1.0 >=24.04.2 v3.0.2 Mar 18, 2025
scnanoseq 1.0.0 >=23.04.0 v2.14.1 Oct 7, 2024
scrnaseq dev >=25.04.0 v3.5.1 Mar 20, 2026
scrnaseq 4.1.0 >=25.04.0 v3.4.1 Oct 30, 2025
scrnaseq 4.0.0 >=24.04.2 v3.2.0 Mar 11, 2025
scrnaseq 3.0.0 >=24.04.2 v3.0.2 Dec 10, 2024
scrnaseq 2.7.1 >=23.04.0 v2.14.1 Aug 15, 2024
scrnaseq 2.7.0 >=23.04.0 v2.14.1 Jun 25, 2024
scrnaseq 2.6.0 >=23.04.0 <2.14.1 May 7, 2024
scrnaseq 2.5.1 >=23.04.0 <2.14.1 Jan 23, 2024
scrnaseq 2.5.0 >=23.04.0 <2.14.1 Jan 10, 2024
scrnaseq 2.4.1 >=23.04.0 <2.14.1 Oct 2, 2023
scrnaseq 2.4.0 >=23.04.0 <2.14.1 Aug 24, 2023
scrnaseq 2.3.2 >=22.10.1 <2.14.1 Jun 7, 2023
scrnaseq 2.3.1 >=22.10.1 <2.14.1 Jun 2, 2023
scrnaseq 2.3.0 >=22.10.1 <2.14.1 May 3, 2023
scrnaseq 2.2.0 >=22.10.1 <2.14.1 Mar 20, 2023
scrnaseq 2.1.0 >=21.10.3 <2.14.1 Oct 6, 2022
scrnaseq 2.0.0 >=21.10.3 <2.14.1 Jun 17, 2022
scrnaseq 1.1.0 >=20.10.0 <2.14.1 Mar 29, 2021
scrnaseq 1.0.0 >=19.10.0 <2.14.1 Dec 9, 2019
seqinspector dev >=25.10.2 v3.5.2 Apr 1, 2026
seqinspector 1.0.1 >=25.10.2 v3.5.2 Mar 2, 2026
seqinspector 1.0.0 >=25.10.2 v3.5.2 Feb 24, 2026
seqsubmit dev >=25.04.0 v3.5.1 Mar 30, 2026
slamseq dev >=19.10.0 <2.14.1 Apr 26, 2021
slamseq 1.0.0 >=19.10.0 <2.14.1 May 14, 2020
smrnaseq dev >=25.04.2 v3.5.1 Jan 7, 2026
smrnaseq 2.4.1 >=25.04.2 v3.5.1 Jan 7, 2026
smrnaseq 2.4.0 >=24.04.2 v3.0.2 Oct 14, 2024
smrnaseq 2.3.1 >=23.04.0 <2.14.1 Apr 18, 2024
smrnaseq 2.3.0 >=23.04.0 <2.14.1 Feb 23, 2024
smrnaseq 2.2.4 >=23.04.0 <2.14.1 Nov 3, 2023
smrnaseq 2.2.3 >=23.04.0 <2.14.1 Sep 6, 2023
smrnaseq 2.2.2 >=23.04.0 <2.14.1 Sep 5, 2023
smrnaseq 2.2.1 >=22.10.1 <2.14.1 May 12, 2023
smrnaseq 2.2.0 >=22.10.1 <2.14.1 Apr 26, 2023
smrnaseq 2.1.0 >=21.10.3 <2.14.1 Oct 24, 2022
smrnaseq 2.0.0 >=21.10.3 <2.14.1 May 31, 2022
smrnaseq 1.1.0 >=20.04.0 <2.14.1 Jun 15, 2021
smrnaseq 1.0.0 >=0.32.0 <2.14.1 Sep 21, 2019
sopa dev >=25.04.0 v3.5.1 Mar 20, 2026
spatialvi dev >=25.04.0 v3.5.2 Mar 20, 2026
spatialxe dev >=25.04.0 v3.5.2 Mar 26, 2026
spinningjenny dev >=23.04.0 <2.14.1 Apr 3, 2024
stableexpression dev >=25.04.0 v3.5.2 Mar 19, 2026
taxprofiler dev >=25.04.2 v3.5.2 Apr 3, 2026
taxprofiler 1.2.6 >=25.04.2 v3.5.2 Feb 16, 2026
taxprofiler 1.2.5 >=25.04.2 v3.5.1 Nov 21, 2025
taxprofiler 1.2.4 >=25.04.2 v3.3.2 Aug 28, 2025
taxprofiler 1.2.3 >=24.04.2 v3.2.0 Mar 13, 2025
taxprofiler 1.2.2 >=24.04.2 v3.1.1 Jan 15, 2025
taxprofiler 1.2.1 >=24.04.2 v3.0.2 Nov 28, 2024
taxprofiler 1.2.0 >=23.04.0 v2.14.1 Oct 3, 2024
taxprofiler 1.1.8 >=23.04.0 v2.14.1 Jun 20, 2024
taxprofiler 1.1.7 >=23.04.0 <2.14.1 Apr 29, 2024
taxprofiler 1.1.6 >=23.04.0 <2.14.1 Apr 16, 2024
taxprofiler 1.1.5 >=23.04.0 <2.14.1 Feb 8, 2024
taxprofiler 1.1.4 >=23.04.0 <2.14.1 Jan 25, 2024
taxprofiler 1.1.3 >=23.04.0 <2.14.1 Jan 12, 2024
taxprofiler 1.1.2 >=23.04.0 <2.14.1 Oct 27, 2023
taxprofiler 1.1.1 >=23.04.0 <2.14.1 Oct 11, 2023
taxprofiler 1.1.0 >=23.04.0 <2.14.1 Sep 19, 2023
taxprofiler 1.0.1 >=22.10.1 <2.14.1 May 15, 2023
taxprofiler 1.0.0 >=22.10.1 <2.14.1 Mar 13, 2023
tbanalyzer dev >=24.04.2 v3.0.2 Oct 30, 2024
tfactivity dev >=25.04.0 v3.5.1 Mar 29, 2026
troughgraph dev >=24.04.2 v3.2.0 Jan 31, 2025
tumourevo dev >=25.04.0 v3.5.1 Apr 2, 2026
variantbenchmarking dev >=25.04.0 v3.5.1 Apr 1, 2026
variantbenchmarking 1.4.0 >=25.04.0 v3.5.1 Dec 3, 2025
variantbenchmarking 1.3.0 >=24.10.5 v3.3.2 Jul 31, 2025
variantbenchmarking 1.2.0 >=24.04.2 v3.2.0 Mar 31, 2025
variantbenchmarking 1.1.0 >=24.04.2 v3.2.0 Mar 7, 2025
variantbenchmarking 1.0.0 >=24.04.2 v3.2.0 Feb 24, 2025
variantcatalogue dev >=22.10.1 <2.14.1 Mar 29, 2023
variantprioritization dev >=25.10.0 v3.5.2 Apr 1, 2026
viralintegration dev >=23.04.0 v2.14.1 Jun 2, 2025
viralintegration 0.1.1 >=23.04.0 <2.14.1 Jul 19, 2023
viralintegration 0.1.0 >=22.10.1 <2.14.1 Mar 29, 2023
viralmetagenome dev >=25.04.0 v3.5.2 Mar 31, 2026
viralmetagenome 1.1.1 >=25.04.0 v3.5.2 Mar 31, 2026
viralmetagenome 1.1.0 >=25.04.0 v3.5.1 Jan 23, 2026
viralmetagenome 1.0.1 >=25.04.0 v3.5.1 Dec 5, 2025
viralmetagenome 1.0.0 >=25.04.0 v3.4.1 Nov 4, 2025
viralmetagenome 0.1.2 >=24.04.2 v3.1.0 Feb 28, 2025
viralmetagenome 0.1.1 >=23.04.0 <2.14.1 May 8, 2024
viralrecon dev >=25.04.0 v3.5.1 Mar 17, 2026
viralrecon 3.0.0 >=25.04.0 v3.4.1 Oct 28, 2025
viralrecon 2.6.0 >=22.10.1 <2.14.1 Mar 23, 2023
viralrecon 2.5 >=21.10.3 <2.14.1 Jul 13, 2022
viralrecon 2.4.1 >=21.10.3 <2.14.1 Mar 1, 2022
viralrecon 2.4 >=21.10.3 <2.14.1 Feb 22, 2022
viralrecon 2.3.1 >=21.10.3 <2.14.1 Feb 15, 2022
viralrecon 2.3 >=21.10.3 <2.14.1 Feb 4, 2022
viralrecon 2.2 >=21.04.0 <2.14.1 Jul 29, 2021
viralrecon 2.1 >=21.04.0 <2.14.1 Jun 15, 2021
viralrecon 2.0 >=21.04.0 <2.14.1 May 13, 2021
viralrecon 1.1.0 >=19.10.0 <2.14.1 Jun 23, 2020
viralrecon 1.0.0 >=19.10.0 <2.14.1 Jun 1, 2020