About the conference
Long-term use and uptake by the life-science community requires that workflows (as well as tools) are findable, accessible, exchanged and combined with others, and further that they are citable so that author’s credit is attributed fairly and accurately.
The work on improving the FAIRness of workflows has already started and a whole ecosystem of tools and standards has been under development to ensure the production of workflow as FAIR research products.
In this workshop we will first review the ideas of FAIR principles for computational workflows.
Scalable, reproducible bioinformatics workflows using Nextflow & nf-core
Alex Peltzer will be giving a 10-minute lightning talk about the concept behind Nextflow and nf-core and give a short update on how approaches to enable FAIRification of nf-core workflows are currently developed.
Slides
- 2024
- #animal genomics: December Meeting
- #animal genomics: July Meeting
- #animal genomics: June Meeting
- #animal genomics: May Meeting
- CANCELLED: #animal genomics: November Meeting
- #animal genomics: October Meeting
- #animal genomics: September Meeting
- #animal genomics: Inaugural Meeting
- #regulatory monthly meeting
- #regulatory: Where do we stand and where do we want to go?
- #regulatory: Kick Off Meeting
- Bioimage Analysis Workshop September 2024 (Tübingen)
- Bytesize: Special Interest Group meta omics
- Bytesize: Animating subway maps
- Bytesize: nf-core blog
- Bytesize: Six tips for community based pipeline development
- Bytesize: nf-core/differentialabundance
- Bytesize: Excalidraw
- Bytesize: nf-core hackathons
- Bytesize: nf-core/metatdenovo
- Bytesize: Contributing to Nextflow
- Bytesize: Nextflow Executors
- Bytesize: the ` nf-core download` command
- Bytesize: nft bam
- Bytesize: Get your containers with "Nextflow inspect"
- Bytesize: Making Pipeline level tests with nf-test
- Bytesize: Resolving merge conflicts after a tools release
- Bytesize: Special Interest Group Animal Genomics
- Bytesize: Containers for HPC with Singularity
- Bytesize: Explaining Wave containers
- Bytesize: nf-core Special Interest Groups
- Hackathon October 2024 (Barcelona)
- Hackathon May 2024 (Boston)
- Hackathon march 2024
- Bern, Switzerland
- Daresbury, UK
- London, UK
- Norwich, UK
- Cambridge, UK
- Buenos Aires, Argentina
- CRG, Barcelona, Spain
- Seqera, Barcelona, Spain
- Ghent, Belgium
- Natal, Brazil
- Sherbrooke, QC, Canada
- Copenhagen, Denmark
- Rennes, France
- Heidelberg, Germany
- Leipzig, Germany
- Berlin, Germany
- Tübingen, Germany
- Pavia, Italy
- Krakow, Poland
- Stockholm, Sweden
- San Francisco, USA
- Dallas, USA
- Seattle, USA
- Bytesize: Removing the 'lib/' directory from the template
- Community Foundational Nextflow Training March 2024
- 2023
- Bytesize: A beginners guide to nf-core
- Bytesize: Converting pytest modules to nf-test
- Bytesize: nf-core/crisprseq
- Bytesize: Using nf-core configs in custom pipelines
- Bytesize: nf-core/funcscan
- Bytesize: git concepts
- Bytesize: Setting up a gitpod environment
- Bytesize: HackMD and reveal.js
- Bytesize: nf-core/hgtseq
- Bytesize: nf-core/mag
- Bytesize: Experiences in the nf-core Mentoring Program
- Bytesize: The Art of a Minimal Example
- Bytesize: nf-core modules patch
- Bytesize: nf-core/taxprofiler
- Bytesize: nf-validation
- Bytesize: nf-core/pangenome
- Bytesize: nf-core/pre commit
- Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers
- Bytesize: nf-core/quantms
- Bytesize: nf-core community survey 2023
- Bytesize: transcripts of bytesize talks
- Bytesize: training translations
- Bytesize: variantcatalogue
- Bytesize: nf-core/viralintegration
- Bytesize: Using Wave Containers
- Bytesize: The new nf-core website
- Bytesize: Workflow safety and immutable objects
- Hackathon march 2023
- Hackathon March 2023 (Natal)
- Hackathon March 2023 (Rennes)
- Hackathon March 2023 (Leipzig)
- Hackathon March 2023 (Tübingen)
- Hackathon March 2023 (Pavia)
- Hackathon March 2023 (Krakow)
- Hackathon March 2023 (APIS Assay Technologies Ltd)
- Hackathon March 2023 (Dakar)
- Hackathon March 2023 (Tygerberg, South Africa)
- Hackathon March 2023 (Barcelona)
- Hackathon March 2023 (Stockholm)
- Hackathon March 2023 (Google Academy)
- Hackathon March 2023 (Edinburgh)
- Hackathon March 2023 (Cambridge)
- Hackathon March 2023 (San Jose)
- Hackathon March 2023 (Dallas)
- Hackathon March 2023 (Wyoming)
- Hackathon November 2023 (Boston)
- Hackathon October 2023 (Barcelona)
- Nextflow Symposium 2023
- Nextflow in Action
- Community Foundational Nextflow Training September 2023
- Hands on Nextflow Training September 2023
- nf-core Training March 2023
- Community Advanced Nextflow Training September 2023
- 2022
- Bytesize 31: nf-core/dualrnaseq
- Bytesize 32: nf-core/rnaseq
- Bytesize 33: Nextflow Tower CLI
- Bytesize 34: Updates on the new DSL2 syntax
- Bytesize 35: Troubleshooting a failed pipeline
- Bytesize 36: Customising your MultiQC reports
- Bytesize 37: Gather Town
- Bytesize 40: Software packaging
- Bytesize 41: Code linting tools
- Bytesize: Subworkflows
- Bytesize: Bactopia & using nf-core components in non nf-core pipelines
- Bytesize: nf-core/chipseq
- Bytesize: using custom scripts in Nextflow pipelines
- Bytesize 2022 05 17: nf-core/cutandrun
- Bytesize: DSL2 Coding style recommendations (Part 1)
- Bytesize: gitpod.io
- Bytesize: nf-core/inkscape and tube map diagrams
- Bytesize: nf-core/nanoseq
- Bytesize: nf-core/nascent
- Bytesize: nf-core/proteinfold
- Bytesize: resources to learn Nextflow
- Bytesize: nf-core/rnafusion
- Bytesize: The Nextflow and nf-core community survey
- Bytesize: nf-core/viralrecon
- Bytesize: Working with GitHub using VSCode and Github CLI
- Bytesize: community updates Sep 2022
- Bytesize: Configuring lint tests
- Bytesize: nf-core/airrflow
- Bytesize: nf-test
- EuroFAANG Training Workshop
- Hackathon March 2022
- Hackathon October 2022 (Barcelona)
- nf-core Training October 2022
- 2021
- Bytesize 1: Introduction to nf-core
- Bytesize 10: Making a new institutional profile
- Bytesize 11: Development environments & workflows
- Bytesize 12: Template sync how to merge automated PRs
- Bytesize 13: Tuning pipeline performance
- Bytesize 14: Graphic design / pipeline diagrams
- Bytesize 15: Pipeline first release
- Bytesize 16: Modules test data
- Bytesize 17: Pytest workflow
- Bytesize 18: Development environments & workflows II
- Bytesize 19: Setting up AWS megatests
- Bytesize 2: How nf-core configs work
- Bytesize 20: Nextflow Tower
- Bytesize 21: nf-core/mhcquant
- Bytesize 22: nf-core/eager
- Bytesize 23: nf-core/hic
- Bytesize 24: Where do I start writing my own DSL2 pipeline?!
- Bytesize 25: nf-core/ampliseq
- Bytesize 26: nf-core/metaboigniter
- Bytesize 27: nf-core/smrnaseq
- Bytesize 28: nf-core/sarek
- Bytesize 29: nf-core/coproid
- Bytesize 3: Pipeline code structure walkthrough
- Bytesize 30: nf-core/pgdb
- Bytesize 4: GitHub contribution basics
- Bytesize 5: DSL2 module development
- Bytesize 6: All about modules
- Bytesize 7: Making the CI tests pass
- Bytesize 8: Running pipelines offline
- Bytesize 9: JSON schema: What, why and how
- ELIXIR Reproducible Research Workshop Nextflow and nf-core
- GenomeWeb Webinar
- Hackathon March 2021
- Hackathon October 2021
- Seqera Labs Cloud Webinar Series Nextflow on Azure Batch
- 2020
- BovReg Workshop and hackathon
- AWS In Spotlight Webinar Series
- BOSC 2020: nf-core poster / demo
- BOSC 2020 Lightning talk: What’s new with nf-core
- ECCB 2020 ELIXIR Workshop on FAIR Computational Workflows
- ELIXIR Proteomics Community Connection with nf-core
- Hackathon @ The Crick
- Hackathon July 2020
- Seminario Institucional, Universidad Nacional Autónoma de México
- Introduction to nf-core/eager
- JOBIM 2020: nf-core, a community effort for collaborative, peer reviewed analysis pipelines