Just 15 minutes + questions, we focus on topics about using and developing nf-core
pipelines. These are recorded and made available at https://nf-co.re
, helping to build an archive of training material. Got an idea for a talk? Let us know on the #bytesize
Slack channel!
In this nf-core bytesize session, Gregor (@grst) will talk about DSO, a command line helper for building reproducible data anlaysis projects with ease. It leverages DVC for data versioning and adds convenience features such as templating, hierarchical config files, linting and integration with quarto reports. DSO can track nf-core pipeline executions and is very well suited to keep track of custom analyses that come downstream of nf-core processing pipelines.
- 2024
- #animal genomics: December Meeting
- #animal genomics: July Meeting
- #animal genomics: June Meeting
- #animal genomics: May Meeting
- CANCELLED: #animal genomics: November Meeting
- #animal genomics: October Meeting
- #animal genomics: September Meeting
- #animal genomics: Inaugural Meeting
- #regulatory monthly meeting
- #regulatory: Where do we stand and where do we want to go?
- #regulatory: Kick Off Meeting
- Bioimage Analysis Workshop September 2024 (Tübingen)
- Bytesize: Special Interest Group meta omics
- Bytesize: Animating subway maps
- Bytesize: nf-core blog
- Bytesize: Six tips for community based pipeline development
- Bytesize: nf-core/differentialabundance
- Bytesize: Excalidraw
- Bytesize: nf-core hackathons
- Bytesize: nf-core/metatdenovo
- Bytesize: Contributing to Nextflow
- Bytesize: Nextflow Executors
- Bytesize: the ` nf-core download` command
- Bytesize: nft bam
- Bytesize: Get your containers with "Nextflow inspect"
- Bytesize: Making Pipeline level tests with nf-test
- Bytesize: Resolving merge conflicts after a tools release
- Bytesize: Special Interest Group Animal Genomics
- Bytesize: Containers for HPC with Singularity
- Bytesize: Explaining Wave containers
- Bytesize: nf-core Special Interest Groups
- Hackathon October 2024 (Barcelona)
- Hackathon May 2024 (Boston)
- Hackathon march 2024
- Bern, Switzerland
- Daresbury, UK
- London, UK
- Norwich, UK
- Cambridge, UK
- Buenos Aires, Argentina
- CRG, Barcelona, Spain
- Seqera, Barcelona, Spain
- Ghent, Belgium
- Natal, Brazil
- Sherbrooke, QC, Canada
- Copenhagen, Denmark
- Rennes, France
- Heidelberg, Germany
- Leipzig, Germany
- Berlin, Germany
- Tübingen, Germany
- Pavia, Italy
- Krakow, Poland
- Stockholm, Sweden
- San Francisco, USA
- Dallas, USA
- Seattle, USA
- Bytesize: Removing the 'lib/' directory from the template
- Community Foundational Nextflow Training March 2024
- 2023
- Bytesize: A beginners guide to nf-core
- Bytesize: Converting pytest modules to nf-test
- Bytesize: nf-core/crisprseq
- Bytesize: Using nf-core configs in custom pipelines
- Bytesize: nf-core/funcscan
- Bytesize: git concepts
- Bytesize: Setting up a gitpod environment
- Bytesize: HackMD and reveal.js
- Bytesize: nf-core/hgtseq
- Bytesize: nf-core/mag
- Bytesize: Experiences in the nf-core Mentoring Program
- Bytesize: The Art of a Minimal Example
- Bytesize: nf-core modules patch
- Bytesize: nf-core/taxprofiler
- Bytesize: nf-validation
- Bytesize: nf-core/pangenome
- Bytesize: nf-core/pre commit
- Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers
- Bytesize: nf-core/quantms
- Bytesize: nf-core community survey 2023
- Bytesize: transcripts of bytesize talks
- Bytesize: training translations
- Bytesize: variantcatalogue
- Bytesize: nf-core/viralintegration
- Bytesize: Using Wave Containers
- Bytesize: The new nf-core website
- Bytesize: Workflow safety and immutable objects
- Hackathon march 2023
- Hackathon March 2023 (Natal)
- Hackathon March 2023 (Rennes)
- Hackathon March 2023 (Leipzig)
- Hackathon March 2023 (Tübingen)
- Hackathon March 2023 (Pavia)
- Hackathon March 2023 (Krakow)
- Hackathon March 2023 (APIS Assay Technologies Ltd)
- Hackathon March 2023 (Dakar)
- Hackathon March 2023 (Tygerberg, South Africa)
- Hackathon March 2023 (Barcelona)
- Hackathon March 2023 (Stockholm)
- Hackathon March 2023 (Google Academy)
- Hackathon March 2023 (Edinburgh)
- Hackathon March 2023 (Cambridge)
- Hackathon March 2023 (San Jose)
- Hackathon March 2023 (Dallas)
- Hackathon March 2023 (Wyoming)
- Hackathon November 2023 (Boston)
- Hackathon October 2023 (Barcelona)
- Nextflow Symposium 2023
- Nextflow in Action
- Community Foundational Nextflow Training September 2023
- Hands on Nextflow Training September 2023
- nf-core Training March 2023
- Community Advanced Nextflow Training September 2023
- 2022
- Bytesize 31: nf-core/dualrnaseq
- Bytesize 32: nf-core/rnaseq
- Bytesize 33: Nextflow Tower CLI
- Bytesize 34: Updates on the new DSL2 syntax
- Bytesize 35: Troubleshooting a failed pipeline
- Bytesize 36: Customising your MultiQC reports
- Bytesize 37: Gather Town
- Bytesize 40: Software packaging
- Bytesize 41: Code linting tools
- Bytesize: Subworkflows
- Bytesize: Bactopia & using nf-core components in non nf-core pipelines
- Bytesize: nf-core/chipseq
- Bytesize: using custom scripts in Nextflow pipelines
- Bytesize 2022 05 17: nf-core/cutandrun
- Bytesize: DSL2 Coding style recommendations (Part 1)
- Bytesize: gitpod.io
- Bytesize: nf-core/inkscape and tube map diagrams
- Bytesize: nf-core/nanoseq
- Bytesize: nf-core/nascent
- Bytesize: nf-core/proteinfold
- Bytesize: resources to learn Nextflow
- Bytesize: nf-core/rnafusion
- Bytesize: The Nextflow and nf-core community survey
- Bytesize: nf-core/viralrecon
- Bytesize: Working with GitHub using VSCode and Github CLI
- Bytesize: community updates Sep 2022
- Bytesize: Configuring lint tests
- Bytesize: nf-core/airrflow
- Bytesize: nf-test
- EuroFAANG Training Workshop
- Hackathon March 2022
- Hackathon October 2022 (Barcelona)
- nf-core Training October 2022
- 2021
- Bytesize 1: Introduction to nf-core
- Bytesize 10: Making a new institutional profile
- Bytesize 11: Development environments & workflows
- Bytesize 12: Template sync how to merge automated PRs
- Bytesize 13: Tuning pipeline performance
- Bytesize 14: Graphic design / pipeline diagrams
- Bytesize 15: Pipeline first release
- Bytesize 16: Modules test data
- Bytesize 17: Pytest workflow
- Bytesize 18: Development environments & workflows II
- Bytesize 19: Setting up AWS megatests
- Bytesize 2: How nf-core configs work
- Bytesize 20: Nextflow Tower
- Bytesize 21: nf-core/mhcquant
- Bytesize 22: nf-core/eager
- Bytesize 23: nf-core/hic
- Bytesize 24: Where do I start writing my own DSL2 pipeline?!
- Bytesize 25: nf-core/ampliseq
- Bytesize 26: nf-core/metaboigniter
- Bytesize 27: nf-core/smrnaseq
- Bytesize 28: nf-core/sarek
- Bytesize 29: nf-core/coproid
- Bytesize 3: Pipeline code structure walkthrough
- Bytesize 30: nf-core/pgdb
- Bytesize 4: GitHub contribution basics
- Bytesize 5: DSL2 module development
- Bytesize 6: All about modules
- Bytesize 7: Making the CI tests pass
- Bytesize 8: Running pipelines offline
- Bytesize 9: JSON schema: What, why and how
- ELIXIR Reproducible Research Workshop Nextflow and nf-core
- GenomeWeb Webinar
- Hackathon March 2021
- Hackathon October 2021
- Seqera Labs Cloud Webinar Series Nextflow on Azure Batch
- 2020
- BovReg Workshop and hackathon
- AWS In Spotlight Webinar Series
- BOSC 2020: nf-core poster / demo
- BOSC 2020 Lightning talk: What’s new with nf-core
- ECCB 2020 ELIXIR Workshop on FAIR Computational Workflows
- ELIXIR Proteomics Community Connection with nf-core
- Hackathon @ The Crick
- Hackathon July 2020
- Seminario Institucional, Universidad Nacional Autónoma de México
- Introduction to nf-core/eager
- JOBIM 2020: nf-core, a community effort for collaborative, peer reviewed analysis pipelines