2024
- Hackathon - May 2024 (Boston)
- #animal-genomics: Inaugural Meeting
- Hackathon - March 2024 (Online)
- Bytesize: nf-core/metatdenovo
- Community Foundational Nextflow Training - March 2024
- Bytesize: Removing the 'lib/' directory from the template
- Bytesize: nf-core Special Interest Groups
- Bytesize: Contributing to Nextflow
- Bytesize: nf-core/differentialabundance
- Bytesize: nf-core hackathons
- Bytesize: nf-core blog
- Bytesize: Nextflow Executors
2023
- Bytesize: git concepts
- Nextflow Symposium 2023
- Hackathon - November 2023 (Boston)
- Bytesize: The Art of a Minimal Example
- Bytesize: nf-core/pangenome
- Bytesize: Converting pytest modules to nf-test
- Bytesize: nf-core/viralintegration
- Hackathon - October 2023 (Barcelona)
- Nextflow in Action
- Bytesize: Using nf-core configs in custom pipelines
- Bytesize: The new nf-core website
- Community Advanced Nextflow Training - September 2023
- Hands-on Nextflow Training - September 2023
- Bytesize: Using Wave Containers
- Bytesize: A beginners guide to nf-core
- Community Foundational Nextflow Training - September 2023
- Bytesize: Setting up a gitpod environment
- Bytesize: nf-validation
- Bytesize: nf-core/quantms
- Bytesize: Workflow safety and immutable objects
- Bytesize: nf-core community survey 2023
- Bytesize: Experiences in the nf-core Mentoring Program
- Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers
- Bytesize: training translations
- Bytesize: HackMD and reveal.js
- Hackathon - March 2023 (Online)
- Bytesize: nf-core/hgtseq
- nf-core Training - March 2023
- Bytesize: nf-core modules patch
- Bytesize: nf-core/mag
- Bytesize: variantcatalogue
- Bytesize: nf-core/crisprseq
- Bytesize: nf-core/pre-commit
- Bytesize: transcripts of bytesize talks
- Bytesize: nf-core/funcscan
- Bytesize: nf-core/taxprofiler
2022
- Bytesize: nf-test
- Bytesize: Working with GitHub using VSCode and Github CLI
- Bytesize: Subworkflows
- Bytesize: using custom scripts in Nextflow pipelines
- Bytesize: Configuring lint tests
- Bytesize: nf-core/nascent
- Bytesize: nf-core/airrflow
- Hackathon - October 2022 (Barcelona)
- nf-core Training - October 2022
- Bytesize: community updates Sep 2022
- Bytesize: nf-core/proteinfold
- Bytesize: nf-core/rnafusion
- Bytesize: nf-core/chipseq
- Bytesize: Bactopia & using nf-core components in non-nf-core pipelines
- Bytesize: nf-core/inkscape and tube map diagrams
- Bytesize: DSL2 Coding style recommendations (Part 1)
- Bytesize: nf-core/nanoseq
- Bytesize: gitpod.io
- Bytesize: nf-core/viralrecon
- Bytesize: resources to learn Nextflow
- Bytesize: The Nextflow and nf-core community survey
- Bytesize 2022-05-17: nf-core/cutandrun
- Bytesize 41: Code linting tools
- EuroFAANG Training Workshop
- Bytesize 40: Software packaging
- Hackathon - March 2022
- Bytesize 37: Gather Town
- Bytesize 36: Customising your MultiQC reports
- Bytesize 35: Troubleshooting a failed pipeline
- Bytesize 34: Updates on the new DSL2 syntax
- Bytesize 33: Nextflow Tower CLI
- Bytesize 32: nf-core/rnaseq
- Bytesize 31: nf-core/dualrnaseq
2021
- Bytesize 30: nf-core/pgdb
- GenomeWeb Webinar
- ELIXIR Reproducible Research Workshop - Nextflow and nf-core
- Bytesize 29: nf-core/coproid
- Bytesize 28: nf-core/sarek
- Bytesize 27: nf-core/smrnaseq
- Bytesize 26: nf-core/metaboigniter
- Hackathon - October 2021
- Bytesize 25: nf-core/ampliseq
- Bytesize 24: Where do I start writing my own DSL2 pipeline?!
- Bytesize 23: nf-core/hic
- Bytesize 22: nf-core/eager
- Bytesize 21: nf-core/mhcquant
- Bytesize 20: Nextflow Tower
- Bytesize 19: Setting up AWS megatests
- Bytesize 18: Development environments & workflows II
- Bytesize 17: Pytest workflow
- Bytesize 16: Modules test data
- Bytesize 15: Pipeline first release
- Bytesize 14: Graphic design / pipeline diagrams
- Bytesize 13: Tuning pipeline performance
- Bytesize 12: Template sync - how to merge automated PRs
- Bytesize 11: Development environments & workflows
- Bytesize 10: Making a new institutional profile
- Seqera Labs Cloud Webinar Series - Nextflow on Azure Batch
- Bytesize 9: JSON-schema: What, why and how
- Bytesize 8: Running pipelines offline
- Hackathon - March 2021
- Bytesize 7: Making the CI tests pass
- Bytesize 6: All about modules
- Bytesize 5: DSL2 module development
- Bytesize 4: GitHub contribution basics
- Bytesize 3: Pipeline code structure walkthrough
- Bytesize 2: How nf-core configs work
- Bytesize 1: Introduction to nf-core
2020
- Introduction to nf-core/eager
- Seminario Institucional, Universidad Nacional Autónoma de México
- BovReg Workshop and hackathon
- AWS In Spotlight Webinar Series
- ELIXIR Proteomics Community - Connection with nf-core
- ECCB 2020 ELIXIR Workshop on FAIR Computational Workflows
- BOSC 2020: nf-core poster / demo
- BOSC 2020 Lightning talk: What’s new with nf-core
- Hackathon July 2020
- JOBIM 2020: nf-core, a community effort for collaborative, peer-reviewed analysis pipelines
- Hackathon @ The Crick
Join us for our weekly series of short talks: nf-core/bytesize.
Just 15 minutes + questions, we focus on topics about using and developing nf-core
pipelines. These are recorded and made available at https://nf-co.re
, helping to build an archive of training material. Got an idea for a talk? Let us know on the #bytesize
Slack channel!
nf-core/metatdenovo is a bioinformatics best-practice analysis pipeline for assembly and annotation of metatranscriptomic data, both prokaryotic and eukaryotic., see more here. In this weeks bytesize, Danilo Di Leo (danilodileo) will show us the ins and outs of the nf-core/metatdenovo pipeline.