Local event to be held at Ardigen office, Kraków.
Primary contact: Mauro Saporita
Local Schedule
Time | Mon. 18 Mar., 2024 | Tue. 19 Mar., 2024 | Wed. 20 Mar., 2024 |
---|---|---|---|
9:30 | Welcome and Setup | Daily Start | Daily Start |
10:00 | Hack! | Hack! | Hack! |
11:00 | |||
12:00 | |||
13:00 | |||
14:00 | |||
15:00 | |||
16:00 | Daily sync | Daily sync | Final wrap-up |
Organisational Information
Registration
Please use the main registration form to sign up and select Kraków, Poland (Ardigen)
.
This can be found on the main hackathon event page, or you can go to it directly here.
Please be aware that there is a limited number of places. We will therefore be able to plan everything based on the number of persons joining.
Location
Podole 76, 30-348 Krakow, Poland. Please ask for Ardigen at the reception.
Material
Please come with your computer and lots of energy for the hackathon.
Food
Ardigen will provide lunch for one day; coffee breaks and gadgets will be provided too. There are also plenty of restaurants and food trucks close to the office.
- 2025
- #animal genomics: January Meeting
- #animal genomics: February Meeting
- #animal genomics: March Meeting
- Bytesize: Content Addressable Data Storage
- #regulatory monthly meeting
- Bytesize: data science operations (DSO)
- Bytesize: using JSON schema in Nextflow pipelines
- Bytesize: Building and testing Nextflow with LLMs and AI agents
- Bytesize: nf-core/multiplesequencealign
- Bytesize: nf-core/fastqrepair
- Bytesize: nf-core/proteinfamilies
- Bytesize: nf-core/variantbenchmarking
- Bytesize: nf-core/rangeland
- Bytesize: nf-core/smrnaseq
- Hackathon October 2025 (Barcelona)
- Hackathon May 2025 (Boston)
- Nextflow Training Week March 2025
- Hackathon march 2025
- 🇦🇺 Australian BioCommons
- 🇵🇱 Kraków
- 🇬🇷 BSRC Alexander Fleming
- 🇨🇿 CEITEC MU
- 🇬🇷 Centre for Research and Technology, Hellas
- 🇮🇳 Corteva Agriscience & Perimatrix IT
- 🇪🇸 CRG
- 🇩🇪 The German Cancer Research Center and GHGA
- 🇫🇷 French National Research Institute for Sustainable Development (IRD) Montpellier
- 🇦🇷 Garrahan Paediatric Hospital, Buenos Aires
- 🇧🇪 Ghent University
- 🇳🇱 Hartwig Medical Foundation x Google
- 🇺🇸 Harvard Chan School & Broad Institute
- 🇫🇷 Institut of Genetics & Development of Rennes
- 🇪🇸 ISCIII CIBERINFEC (Madrid)
- 🇬🇧 James Hutton Institute
- 🇬🇭 KATH Ghana
- 🇰🇪 Kemri wellcome Trust Program
- 🇨🇭 Kinderspital Zürich
- 🇨🇴 Medellín, Colombia
- 🇺🇸 Memorial Sloan Kettering Cancer Center
- 🇨🇦 Montreal McGill
- 🇵🇰 National University of Sciences and Technology (NUST)
- 🇳🇿 North Island
- 🇪🇹 Nexsis Analytics
- 🇩🇪 QBiC University of Tuebingen
- 🇩🇪 Robert Koch Institute
- 🇹🇷 Istanbul Turkey
- 🇺🇸 San Francisco Bay Area
- 🇨🇦 Sherbrooke Quebec Canada
- 🇪🇸 Seqera
- 🇩🇪 TUM/LMU Munich
- 🇿🇦 Stellenbosch University
- 🇬🇧 University College London
- 🇺🇸 Sylvester Comprehensive Cancer Center
- 🇧🇷 Brain Institute, Federal University of Rio Grande do Norte
- 🇮🇹 University of Pavia
- 🇮🇹 Dept. Chemistry and Biology "A. Zambelli" University of Salerno
- 🇸🇪 Uppsala University
- 🇺🇸 UT Dallas
- 🇧🇷 Cilla Tech Park
- 🇬🇧 Wellcome Genome Campus
- 🇦🇷 ZS Associates, Buenos Aires
- 🇩🇰 ZS Associates, Copenhagen
- 2024
- #animal genomics: December Meeting
- #animal genomics: July Meeting
- #animal genomics: June Meeting
- #animal genomics: May Meeting
- #animal genomics: October Meeting
- CANCELLED: #animal genomics: November Meeting
- #animal genomics: September Meeting
- #animal genomics: Inaugural Meeting
- #regulatory monthly meeting
- #regulatory: Where do we stand and where do we want to go?
- #regulatory: Kick Off Meeting
- Bioimage Analysis Workshop September 2024 (Tübingen)
- Bytesize: Special Interest Group meta omics
- Bytesize: Animating subway maps
- Bytesize: Six tips for community based pipeline development
- Bytesize: nf-core blog
- Bytesize: nf-core/differentialabundance
- Bytesize: Excalidraw
- Bytesize: nf-core hackathons
- Bytesize: nf-core/metatdenovo
- Bytesize: Contributing to Nextflow
- Bytesize: Nextflow Executors
- Bytesize: nft bam
- Bytesize: the ` nf-core download` command
- Bytesize: Get your containers with "Nextflow inspect"
- Bytesize: Making Pipeline level tests with nf-test
- Bytesize: Resolving merge conflicts after a tools release
- Bytesize: Containers for HPC with Singularity
- Bytesize: Special Interest Group Animal Genomics
- Bytesize: Explaining Wave containers
- Bytesize: nf-core Special Interest Groups
- Hackathon October 2024 (Barcelona)
- Hackathon May 2024 (Boston)
- Bytesize: Removing the 'lib/' directory from the template
- Community Foundational Nextflow Training March 2024
- Hackathon march 2024
- Bern, Switzerland
- Daresbury, UK
- London, UK
- Norwich, UK
- Cambridge, UK
- Buenos Aires, Argentina
- CRG, Barcelona, Spain
- Seqera, Barcelona, Spain
- Ghent, Belgium
- Natal, Brazil
- Sherbrooke, QC, Canada
- Copenhagen, Denmark
- Rennes, France
- Heidelberg, Germany
- Leipzig, Germany
- Berlin, Germany
- Tübingen, Germany
- Pavia, Italy
- Krakow, Poland
- Stockholm, Sweden
- San Francisco, USA
- Dallas, USA
- Seattle, USA
- 2023
- Bytesize: A beginners guide to nf-core
- Bytesize: Converting pytest modules to nf-test
- Bytesize: nf-core/crisprseq
- Bytesize: Using nf-core configs in custom pipelines
- Bytesize: git concepts
- Bytesize: nf-core/funcscan
- Bytesize: Setting up a gitpod environment
- Bytesize: HackMD and reveal.js
- Bytesize: nf-core/hgtseq
- Bytesize: nf-core/mag
- Bytesize: Experiences in the nf-core Mentoring Program
- Bytesize: The Art of a Minimal Example
- Bytesize: nf-core modules patch
- Bytesize: nf-core/taxprofiler
- Bytesize: nf-validation
- Bytesize: nf-core/pangenome
- Bytesize: nf-core/pre commit
- Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers
- Bytesize: nf-core/quantms
- Bytesize: nf-core community survey 2023
- Bytesize: transcripts of bytesize talks
- Bytesize: training translations
- Bytesize: variantcatalogue
- Bytesize: nf-core/viralintegration
- Bytesize: Using Wave Containers
- Bytesize: The new nf-core website
- Bytesize: Workflow safety and immutable objects
- Hackathon November 2023 (Boston)
- Hackathon October 2023 (Barcelona)
- Nextflow Symposium 2023
- Nextflow in Action
- Community Foundational Nextflow Training September 2023
- nf-core Training March 2023
- Hands on Nextflow Training September 2023
- Hackathon march 2023
- Hackathon March 2023 (Natal)
- Hackathon March 2023 (Rennes)
- Hackathon March 2023 (Leipzig)
- Hackathon March 2023 (Tübingen)
- Hackathon March 2023 (Pavia)
- Hackathon March 2023 (Krakow)
- Hackathon March 2023 (APIS Assay Technologies Ltd)
- Hackathon March 2023 (Dakar)
- Hackathon March 2023 (Tygerberg, South Africa)
- Hackathon March 2023 (Barcelona)
- Hackathon March 2023 (Stockholm)
- Hackathon March 2023 (Google Academy)
- Hackathon March 2023 (Edinburgh)
- Hackathon March 2023 (Cambridge)
- Hackathon March 2023 (San Jose)
- Hackathon March 2023 (Dallas)
- Hackathon March 2023 (Wyoming)
- Community Advanced Nextflow Training September 2023
- 2022
- Bytesize 31: nf-core/dualrnaseq
- Bytesize 32: nf-core/rnaseq
- Bytesize 33: Nextflow Tower CLI
- Bytesize 34: Updates on the new DSL2 syntax
- Bytesize 35: Troubleshooting a failed pipeline
- Bytesize 36: Customising your MultiQC reports
- Bytesize 37: Gather Town
- Bytesize 40: Software packaging
- Bytesize 41: Code linting tools
- Bytesize: Subworkflows
- Bytesize: Bactopia & using nf-core components in non nf-core pipelines
- Bytesize: using custom scripts in Nextflow pipelines
- Bytesize: nf-core/chipseq
- Bytesize: gitpod.io
- Bytesize 2022 05 17: nf-core/cutandrun
- Bytesize: DSL2 Coding style recommendations (Part 1)
- Bytesize: nf-core/inkscape and tube map diagrams
- Bytesize: nf-core/nanoseq
- Bytesize: nf-core/nascent
- Bytesize: nf-core/proteinfold
- Bytesize: resources to learn Nextflow
- Bytesize: nf-core/rnafusion
- Bytesize: The Nextflow and nf-core community survey
- Bytesize: Working with GitHub using VSCode and Github CLI
- Bytesize: nf-core/viralrecon
- Bytesize: Configuring lint tests
- Bytesize: community updates Sep 2022
- Bytesize: nf-core/airrflow
- Bytesize: nf-test
- EuroFAANG Training Workshop
- Hackathon March 2022
- Hackathon October 2022 (Barcelona)
- nf-core Training October 2022
- 2021
- Bytesize 1: Introduction to nf-core
- Bytesize 11: Development environments & workflows
- Bytesize 10: Making a new institutional profile
- Bytesize 12: Template sync how to merge automated PRs
- Bytesize 13: Tuning pipeline performance
- Bytesize 15: Pipeline first release
- Bytesize 16: Modules test data
- Bytesize 18: Development environments & workflows II
- Bytesize 14: Graphic design / pipeline diagrams
- Bytesize 17: Pytest workflow
- Bytesize 19: Setting up AWS megatests
- Bytesize 2: How nf-core configs work
- Bytesize 20: Nextflow Tower
- Bytesize 21: nf-core/mhcquant
- Bytesize 22: nf-core/eager
- Bytesize 23: nf-core/hic
- Bytesize 24: Where do I start writing my own DSL2 pipeline?!
- Bytesize 25: nf-core/ampliseq
- Bytesize 26: nf-core/metaboigniter
- Bytesize 27: nf-core/smrnaseq
- Bytesize 28: nf-core/sarek
- Bytesize 29: nf-core/coproid
- Bytesize 3: Pipeline code structure walkthrough
- Bytesize 30: nf-core/pgdb
- Bytesize 5: DSL2 module development
- Bytesize 6: All about modules
- Bytesize 7: Making the CI tests pass
- Bytesize 4: GitHub contribution basics
- Bytesize 8: Running pipelines offline
- Bytesize 9: JSON schema: What, why and how
- ELIXIR Reproducible Research Workshop Nextflow and nf-core
- GenomeWeb Webinar
- Hackathon March 2021
- Hackathon October 2021
- Seqera Labs Cloud Webinar Series Nextflow on Azure Batch
- 2020
- BovReg Workshop and hackathon
- AWS In Spotlight Webinar Series
- ECCB 2020 ELIXIR Workshop on FAIR Computational Workflows
- ELIXIR Proteomics Community Connection with nf-core
- Hackathon @ The Crick
- BOSC 2020: nf-core poster / demo
- BOSC 2020 Lightning talk: What’s new with nf-core
- Hackathon July 2020
- Seminario Institucional, Universidad Nacional Autónoma de México
- Introduction to nf-core/eager
- JOBIM 2020: nf-core, a community effort for collaborative, peer reviewed analysis pipelines